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Agent Skills

Trusted skills for AI agents from official vendors and established maintainers. Every skill is attributed to its author, scanned, and comes with install steps for your AI tool.

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5813 skills

  • Rowan

    K-Dense· Community

    Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related small-molecule or protein modeling tasks. Ideal for programmatic batch screening, multi-step chemistry pipelines, and workflows that would otherwise require maintaining local HPC/GPU infrastructure.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyLow riskGitHub stars of the source repository56.4k

  • Stable Baselines3

    K-Dense· Community

    A PyTorch-based library for training and evaluating reinforcement learning agents using standardized algorithms and environments.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Marine Carbonate Chemistry

    K-Dense· Community

    A workflow for calculating seawater carbonate chemistry, mineral saturation, and uncertainty propagation using PyCO2SYS.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Ncats Arax

    K-Dense· Community

    Query the NCATS ARAX biomedical knowledge graph API for bounded, provenance-rich relationship lookups.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Peer Review

    K-Dense· Community

    A local-only workflow for preparing structured, evidence-based peer review drafts for scientific manuscripts.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Glycoengineering

    K-Dense· Community

    Analyzes and engineers protein glycosylation by scanning canonical N-glycosylation sequons, describing S/T-rich regions, checking curated glycan evidence, and preparing NetNGlyc, NetOGlyc and GlycoSHIELD workflows. Use for glycoprotein engineering, antibody Fc glycosylation, glycan shielding, and site-specific glycoproteomics interpretation.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyLow riskHas scriptsGitHub stars of the source repository56.4k

  • Dask

    K-Dense· Community

    Parallel and distributed computing library for scaling Python research workflows.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k

  • Cellprofiler

    K-Dense· Community

    Automates reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counting, and fluorescence measurement.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Open Notebook

    K-Dense· Community

    Integrate with the self-hosted Open Notebook platform to automate research ingestion, context-aware chat, and AI-driven analysis.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Paperclip

    K-Dense· Community

    Interface for searching and reading biomedical literature, regulatory documents, and clinical trial data via the GXL Paperclip CLI and SDK.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITMedium riskGitHub stars of the source repository56.4k

  • Flowkit

    K-Dense· Community

    Analyze flow cytometry data and reproduce FlowJo workspaces using the FlowKit Python library.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Primer Design

    K-Dense· Community

    A comprehensive workflow for designing, auditing, and validating PCR and RT-qPCR primer pairs using local tools.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Pyhealth

    K-Dense· Community

    Builds and validates clinical machine-learning pipelines for EHR, signals, and medical imaging using PyHealth 2.0.2.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Zarr Python

    K-Dense· Community

    A guide for storing and querying chunked N-D scientific arrays using Zarr-Python 3.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k

  • Pybamm

    K-Dense· Community

    Simulate lithium-ion battery experiments using PyBaMM with automated numerical validation and parameter provenance.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Literature Review

    K-Dense· Community

    A systematic framework for conducting, documenting, and reporting academic literature reviews.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Dnanexus Integration

    K-Dense· Community

    Build, manage, and execute reproducible genomics workloads on the DNAnexus platform using the dx CLI, SDK, and workflow tools.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Pymc

    K-Dense· Community

    Build, diagnose, and compare Bayesian probabilistic models using PyMC, PyTensor, and ArviZ.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Academic Paper Reviewer

    Edward Cheng-I Wu· Community

    Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review, calibrate reviewer, reviewer calibration, measure reviewer accuracy, 審查論文, 論文審查, 模擬審查, 同儕審查, 幫我審這篇, 以審查人角度評估, 審查者校準, 논문 심사, 동료 심사, 모의 심사, 심사자 관점에서 평가, 심사자 보정, revisar artículo, revisión entre pares, revisión de manuscrito, informe de árbitro, revisa mi artículo, criticar artículo, simular revisión, revisión editorial, calibrar revisor.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyGitHub stars of the source repository55.7k

  • Academic Paper

    Edward Cheng-I Wu· Community

    12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, I got reviewer comments, revision roadmap, should we push back, conference rebuttal, grant panel response, audit my rebuttal, check my response draft, AI disclosure, check citations, citation check, check my references, verify references, look over the refs, 寫論文, 學術論文, 引導我寫論文, 審查意見, 我收到審查意見, 修訂路線圖, 評估回覆, 檢查引用, 引用檢查, 檢查參考文獻, 核對文獻, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견을 받았어, 심사 의견 반영, 답변서 점검, AI 사용 고지, 인용 확인, 인용 형식 검사, enmendar mi artículo, redactar artículo, guía mi artículo, analizar reseñas, auditar mi respuesta, verificar borrador de respuesta, verificar citas, divulgación de IA.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyGitHub stars of the source repository55.7k

  • Sr Screener

    Edward Cheng-I Wu· Community

    Protocol-driven study screening for systematic, scoping and rapid reviews. Turns a proposal or PROSPERO protocol into confirmed eligibility rules, then screens titles/abstracts and full texts with two blinded AI reviewers and a third-reviewer adjudicator: ordered exclusion codes, no silent defaults, resumable batch runs, QC (seed studies, near-miss rechecks, kappa and PABAK), PRISMA 2020 counts, EndNote/Zotero RIS groups, an Excel log, a methods draft and a literature_corpus handoff to academic-paper. Reads RIS, PubMed .nbib, Web of Science and CSV exports; removes duplicates. 8 modes: protocol, quick, pilot, ta-screen, ft-screen, adjudicate, audit, report. Use it to screen records against eligibility criteria, pilot screening, resolve screening conflicts, audit exclusions or report the selection process. Triggers on: screen these papers, title/abstract screening, full-text screening, screening conflicts, inclusion criteria, PRISMA flow, غربالگری مقالات, اسکرینینگ عنوان و چکیده, معیارهای ورود و خروج.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyLow riskHas scriptsGitHub stars of the source repository55.7k

  • Academic Pipeline

    Edward Cheng-I Wu· Community

    Orchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise -> re-review -> re-revise -> final integrity check -> finalize. Coordinates deep-research, academic-paper, and academic-paper-reviewer into a seamless 10-stage workflow with mandatory, coverage-bounded integrity checks, two-stage peer review, and auditable quality-assurance artifacts. Triggers on: academic pipeline, research to paper, full paper workflow, paper pipeline, end-to-end paper, research-to-publication, complete paper workflow, 연구부터 논문까지, 연구 주제 설정부터 논문 완성까지, 논문 전체 워크플로, flujo de trabajo académico, investigación a artículo, flujo completo de artículo, pipeline de investigación completa, publicación de investigación, flujo de trabajo completo del artículo.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyGitHub stars of the source repository55.7k

  • Deep Research

    Edward Cheng-I Wu· Community

    Universal deep research agent team. 13-agent pipeline for rigorous academic research on any topic. 8 modes: full research, quick brief, paper review, lit-review, fact-check, three-way literature scan, Socratic guided research dialogue, and systematic review with optional meta-analysis. Covers research question formulation, Socratic mentoring, methodology design, systematic literature search, source verification, cross-source synthesis, risk of bias assessment, meta-analysis, APA 7.0 report compilation, editorial review, devil's advocate challenges, ethics review, and post-research literature monitoring. Triggers on: research, deep research, literature review, systematic review, meta-analysis, PRISMA, evidence synthesis, fact-check, WHY HOW WHAT papers, 3W literature scan, guide my research, help me think through, 研究, 深度研究, 文獻回顧, 文獻探討, 系統性回顧, 後設分析, 事實查核, 三段式文獻掃描, 引導我的研究, 幫我釐清, 幫我想想, 我不確定要研究什麼, 研究方向, 研究主題, 심층 연구, 문헌 조사, 체계적 문헌고찰, 메타분석, 사실 확인, 연구 방향을 잡아줘, 연구 주제 정하는 것을 도와줘, revisión de literatura, metaanálisis

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyMedium riskGitHub stars of the source repository55.7k

  • Applying Brand Guidelines

    AnthropicOfficial

    A comprehensive set of corporate branding standards for consistent visual and textual communication across documents.

    Documents and contentClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository54.4k