Genomic Coordinates
K-Dense· Community
A toolkit for reconciling genomic coordinate systems, normalizing variants, and validating assembly compatibility across bioinformatics formats.
Trusted skills for AI agents from official vendors and established maintainers. Every skill is attributed to its author, scanned, and comes with install steps for your AI tool.
5813 skills
K-Dense· Community
A toolkit for reconciling genomic coordinate systems, normalizing variants, and validating assembly compatibility across bioinformatics formats.
K-Dense· Community
Design robust, interpretable experiments by planning randomization, blocking, and treatment structures before collecting data.
K-Dense· Community
Featurize small molecules for machine learning using the Molfeat library.
K-Dense· Community
Operate and extend Pi, the minimal terminal coding harness for AI-assisted development.
K-Dense· Community
A local, evidence-based framework for developmental review of scholarly works and research assessment processes.
K-Dense· Community
Access DeepMind's AlphaGenome Atlas for variant impact prediction, mechanistic interpretation, and regulatory effect analysis of SNVs.
K-Dense· Community
Access transformer-based DNA language models for regulatory genomics and gene expression prediction via REST API or MCP.
K-Dense· Community
Access U.S. Treasury federal financial data via the Fiscal Data REST API.
K-Dense· Community
Access molecular design and structural biology tools on the Tamarind Bio platform via REST API or MCP.
K-Dense· Community
Stores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample queries, streaming results, allele statistics, QC, and VCF/BCF export locally or through TileDB Cloud.
K-Dense· Community
Accelerate scientific Python workloads on NVIDIA GPUs using the RAPIDS ecosystem and custom kernels.
K-Dense· Community
Guidance and local audit tools for Python workflows using GeoPandas 1.2.0 for spatial data analysis.
K-Dense· Community
Perform genomic interval arithmetic and bioinformatics file I/O using Polars DataFrames.
K-Dense· Community
Query, filter, and download public cancer imaging datasets from the NCI Imaging Data Commons.
K-Dense· Community
Develop and simulate lab automation protocols using the PyLabRobot 0.2.2 framework.
K-Dense· Community
A Python toolkit for analyzing, manipulating, and visualizing phylogenetic and hierarchical trees using ETE 4.
K-Dense· Community
A comprehensive toolkit for pharmacokinetic and pharmacodynamic modeling, simulation, and data analysis.
K-Dense· Community
A comprehensive Python library for computational molecular biology, sequence analysis, and bioinformatics workflows.
K-Dense· Community
A lightweight utility for converting diverse document formats into structured Markdown for analysis, search, and LLM ingestion.
K-Dense· Community
Automated QIIME 2 workflow for processing paired-end 16S amplicon sequencing data with provenance tracking.
K-Dense· Community
Resolves and validates scientific labels against standard ontologies using EBI OLS4, Bioregistry, and other research-focused identifier services.
K-Dense· Community
A toolkit for working with Outpost Bio's Waypoint microbiome foundation models and the Compass benchmark.
K-Dense· Community
Perform exact symbolic mathematics, calculus, and equation solving using the SymPy Python library.
K-Dense· Community
Query and analyze public pathogen genomic surveillance data from GenSpectrum and Pathoplexus LAPIS deployments.