Mongodb Atlas Stream Processing
MongoDBOfficialPublished by MongoDB
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- Data and AI
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AutoGineer summary
Written by AutoGineer from the skill’s own files, not by the author
This skill provides a structured interface for managing MongoDB Atlas Stream Processing (ASP) workflows. It enables users to provision workspaces, configure data connections, build stream processing pipelines, and monitor processor health. The skill emphasizes a rigorous development lifecycle, including mandatory pre-deployment validation of connections and pipeline stages, to ensure reliable data streaming between sources like Kafka, Atlas clusters, S3, and Lambda.
What it does
- Provisions and manages Atlas Stream Processing workspaces and tiers.
- Configures connections for diverse data sources and sinks including Kafka, S3, and Atlas clusters.
- Builds and deploys streaming pipelines with support for windowing, enrichment, and validation.
- Provides diagnostic tools to monitor processor state, health, and performance metrics.
- Handles lifecycle operations such as starting, stopping, modifying, and tearing down processors.
- Enforces safety checks for workspace and connection deletion to prevent accidental data loss.
When to use it
- When you need to build real-time data processing pipelines within the MongoDB Atlas ecosystem.
- When you are setting up streaming integrations between Kafka, S3, AWS Lambda, and MongoDB.
- When you need to perform health checks or debug existing stream processing workloads.
- When you require a structured, repeatable workflow for deploying and managing stream processors.
Advantages
- Reduces configuration errors through mandatory pre-deployment validation steps.
- Provides a unified interface for complex streaming infrastructure management.
- Supports safe lifecycle management with built-in state checks and teardown safeguards.
- Facilitates easier debugging with integrated diagnostic reports and health monitoring.
Usage examples
- “Create a new stream processing workspace in the US-East-1 region.”
- The agent will use the build tool to provision a new workspace, ensuring the correct region mapping for AWS is applied.
- “Diagnose why my Kafka-to-Atlas processor is failing.”
- The agent will run a diagnostic report on the specified processor to identify errors, check partition status, and suggest remediation steps.
Install
Download the skill as a ZIP:
https://autogineer.com/agent-skills/mongodb/mongodb-atlas-stream-processing/downloadUnzip it into the cross-client skills folder of your project:
mkdir -p .agents/skills && unzip mongodb-atlas-stream-processing.zip -d .agents/skills
Documentation by MongoDB
MongoDB Atlas Streams
Build, operate, and debug Atlas Stream Processing (ASP) pipelines using four MCP tools from the MongoDB MCP Server.
Prerequisites
This skill requires the MongoDB MCP Server connected with:
Atlas API credentials (
apiClientIdandapiClientSecret)
The 4 tools: atlas-streams-discover, atlas-streams-build, atlas-streams-manage, atlas-streams-teardown.
All operations require an Atlas project ID. If unknown, call atlas-list-projects first to find your project ID.
If MCP tools are unavailable
If the MongoDB MCP Server is not connected or the streams tools are missing, see references/mcp-troubleshooting.md for diagnostic steps and fallback options.
Tool Selection Matrix
atlas-streams-discover — ALL read operations
| Action | Use when |
|---|---|
list-workspaces | See all workspaces in a project |
inspect-workspace | Review workspace config, state, region |
list-connections | See all connections in a workspace |
inspect-connection | Check connection state, config, health |
list-processors | See all processors in a workspace |
inspect-processor | Check processor state, pipeline, config |
diagnose-processor | Full health report: state, stats, errors |
get-networking | PrivateLink and VPC peering details. Optional: cloudProvider + region to get Atlas account details for PrivateLink setup |
Pagination (all list actions): limit (1-100, default 20), pageNum (default 1).
Response format: responseFormat — "concise" (default for list actions) or "detailed" (default for inspect/diagnose).
atlas-streams-build — ALL create operations
| Resource | Key parameters |
|---|---|
workspace | cloudProvider, region, tier (default SP10), includeSampleData |
connection | connectionName, connectionType (Kafka/Cluster/S3/Https/Kinesis/Lambda/SchemaRegistry/Sample), connectionConfig |
processor | processorName, pipeline (must start with $source, end with $merge/$emit), dlq, autoStart |
privatelink | privateLinkConfig (project-level, not tied to a specific workspace) |
Field mapping — only fill fields for the selected resource type:
resource = "workspace": Fill:
projectId,workspaceName,cloudProvider,region,tier,includeSampleData. Leave empty: all connection and processor fields.resource = "connection": Fill:
projectId,workspaceName,connectionName,connectionType,connectionConfig. Leave empty: all workspace and processor fields. (See references/connection-configs.md for type-specific schemas.)resource = "processor": Fill:
projectId,workspaceName,processorName,pipeline,dlq(recommended),autoStart(optional). Leave empty: all workspace and connection fields. (See references/pipeline-patterns.md for pipeline examples.)resource = "privatelink": Fill:
projectId,privateLinkConfig. Note: PrivateLink is project-level, not workspace-level.workspaceNameis not required — omit it. Leave empty: all connection and processor fields.
atlas-streams-manage — ALL update/state operations
| Action | Notes |
|---|---|
start-processor | Begins billing. Optional tier override, resumeFromCheckpoint |
stop-processor | Stops billing. Retains state 45 days |
modify-processor | Processor must be stopped first. Change pipeline, DLQ, or name |
update-workspace | Change tier or region |
update-connection | Update config (networking is immutable — must delete and recreate) |
accept-peering / reject-peering | VPC peering management |
Field mapping — always fill projectId, workspaceName, then by action:
"start-processor"→resourceName. Optional:tier,resumeFromCheckpoint,startAtOperationTime(ISO 8601 timestamp to resume from a specific point)"stop-processor"→resourceName"modify-processor"→resourceName. At least one of:pipeline,dlq,newName"update-workspace"→newRegionornewTier"update-connection"→resourceName,connectionConfig. Exception: networking config (e.g., PrivateLink) cannot be modified after creation — delete and recreate."accept-peering"→peeringId,requesterAccountId,requesterVpcId"reject-peering"→peeringId
State pre-checks:
start-processor→ errors if processor is already STARTEDstop-processor→ no-ops if already STOPPED or CREATED (not an error)modify-processor→ errors if processor is STARTED (must stop first)
Processor states: CREATED → STARTED (via start) → STOPPED (via stop). Can also enter FAILED on runtime errors. Modify requires STOPPED or CREATED state.
Teardown safety checks:
Processor deletion → auto-stops before deleting (no need to stop manually first)
Connection deletion → blocks if any running processor references it. Stop/delete referencing processors first.
Workspace deletion → See detailed workflow below (lines 108-111).
atlas-streams-teardown — ALL delete operations
| Resource | Safety behavior |
|---|---|
processor | Auto-stops before deleting |
connection | Blocks if referenced by running processor |
workspace | Cascading delete of all connections and processors |
privatelink / peering | Remove networking resources |
Field mapping — always fill projectId, resource, then:
resource: "workspace"→workspaceNameresource: "connection"or"processor"→workspaceName,resourceNameresource: "privatelink"or"peering"→resourceName(the ID). These are project-level resources, not tied to a specific workspace.
Before deleting a workspace, inspect it first:
atlas-streams-discover→inspect-workspace— get connection/processor countsPresent to user: "Workspace X contains N connections and M processors. Deleting permanently removes all. Proceed?"
Wait for confirmation before calling
atlas-streams-teardown
CRITICAL: Validate Before Creating Processors
You MUST call search-knowledge before composing any processor pipeline. This is not optional.
Field validation: Query with the sink/source type, e.g. "Atlas Stream Processing $emit S3 fields" or "Atlas Stream Processing Kafka $source configuration". This catches errors like
prefixvspathfor S3$emit.Pattern examples: Query with
dataSources: [{"name": "devcenter"}]for working pipelines, e.g. "Atlas Stream Processing tumbling window example".
Also fetch examples from the official ASP examples repo when building non-trivial processors: https://github.com/mongodb/ASP_example (quickstarts, example processors, Terraform examples). Start with example_processors/README.md for the full pattern catalog.
Key quickstarts:
| Quickstart | Pattern |
|---|---|
00_hello_world.json | Inline $source.documents with $match (zero infra, ephemeral) |
01_changestream_basic.json | Change stream → tumbling window → $merge to Atlas |
03_kafka_to_mongo.json | Kafka source → tumbling window rollup → $merge to Atlas |
04_mongo_to_mongo.json | Chained processors: rollup → archive to separate collection |
05_kafka_tail.json | Real-time Kafka topic monitoring (sinkless, like tail -f) |
Pipeline Rules & Warnings
Invalid constructs — these are NOT valid in streaming pipelines:
$$NOW,$$ROOT,$$CURRENT— NOT available in stream processing. NEVER use these. Use the document's own timestamp field or_stream_metametadata for event time instead of$$NOW.HTTPS connections as
$source— HTTPS is for$httpsenrichment or sink only, NOT as a data sourceKafka
$sourcewithouttopic— topic field is requiredPipelines without a sink — terminal stage (
$merge,$emit,$https, or$externalFunctionasync) required for deployed processors (sinkless only works viasp.process())Lambda as
$emittarget — Lambda uses$externalFunction(mid-pipeline enrichment), not$emit$validatewithvalidationAction: "error"— crashes processor; use"dlq"instead
Required fields by stage:
$source(change stream): includefullDocument: "updateLookup"to get the full document content$source(Kinesis): usestream(NOTstreamNameortopic)$emit(Kinesis): MUST includepartitionKey$emit(S3): usepath(NOTprefix)$https: must includeconnectionName,path,method,as,onError: "dlq"$externalFunction: must includeconnectionName,functionName,execution,as,onError: "dlq"$validate: must includevalidatorwith$jsonSchemaandvalidationAction: "dlq"$lookup: includeparallelismsetting (e.g.,parallelism: 2) for concurrent I/OAWS connections (S3, Kinesis, Lambda): IAM role ARN must be registered via Atlas Cloud Provider Access first. Always confirm this with user. See references/connection-configs.md for details.
See references/pipeline-patterns.md for stage field examples with JSON syntax.
SchemaRegistry connection: connectionType must be "SchemaRegistry" (not "Kafka"). Schema type values are case-sensitive (use lowercase avro, not AVRO). See references/connection-configs.md for required fields and auth types.
MCP Tool Behaviors
Elicitation: When creating connections, the build tool auto-collects missing sensitive fields (passwords, bootstrap servers) via MCP elicitation. Do NOT ask the user for these — let the tool collect them.
Auto-normalization:
bootstrapServersarray → auto-converted to comma-separated stringschemaRegistryUrlsstring → auto-wrapped in arraydbRoleToExecute→ defaults to{role: "readWriteAnyDatabase", type: "BUILT_IN"}for Cluster connections
Workspace creation: includeSampleData defaults to true, which auto-creates the sample_stream_solar connection.
Region naming: The region field uses Atlas-specific names that differ by cloud provider. Using the wrong format returns a cryptic dataProcessRegion error.
| Provider | Cloud Region | Streams region Value |
|---|---|---|
| AWS | us-east-1 | VIRGINIA_USA |
| AWS | us-east-2 | OHIO_USA |
| AWS | eu-west-1 | DUBLIN_IRL |
| GCP | us-central1 | US_CENTRAL1 |
| GCP | europe-west1 | EUROPE_WEST1 |
| Azure | eastus | eastus |
| Azure | westeurope | westeurope |
See references/connection-configs.md for the full region mapping table. If unsure, inspect an existing workspace with atlas-streams-discover → inspect-workspace and check dataProcessRegion.region.
Connection Capabilities — Source/Sink Reference
Know what each connection type can do before creating pipelines:
| Connection Type | As Source ($source) | As Sink ($merge / $emit) | Mid-Pipeline | Notes |
|---|---|---|---|---|
| Cluster | ✅ Change streams | ✅ $merge to collections | ✅ $lookup | Change streams monitor insert/update/delete/replace operations |
| Kafka | ✅ Topic consumer | ✅ $emit to topics | ❌ | Source MUST include topic field |
| Sample Stream | ✅ Sample data | ❌ Not valid | ❌ | Testing/demo only |
| S3 | ❌ Not valid | ✅ $emit to buckets | ❌ | Sink only - use path, format, compression. Supports AWS PrivateLink. |
| Https | ❌ Not valid | ✅ $https as sink | ✅ $https enrichment | Can be used mid-pipeline for enrichment OR as final sink stage |
| AWSLambda | ❌ Not valid | ✅ $externalFunction (async only) | ✅ $externalFunction (sync or async) | Sink: execution: "async" required. Mid-pipeline: execution: "sync" or "async" |
| AWS Kinesis | ✅ Stream consumer | ✅ $emit to streams | ❌ | Similar to Kafka pattern |
| SchemaRegistry | ❌ Not valid | ❌ Not valid | ✅ Schema resolution | Metadata only - used by Kafka connections for Avro schemas |
Common connection usage mistakes to avoid:
❌ Using
$externalFunctionas sink withexecution: "sync"→ Must useexecution: "async"for sink stage❌ Forgetting change streams exist → Atlas Cluster is a powerful source, not just a sink
❌ Using
$mergewith Kafka → Use$emitfor Kafka sinks
See references/connection-configs.md for detailed connection configuration schemas by type.
Core Workflows
Setup from scratch
atlas-streams-discover→list-workspaces(check existing)atlas-streams-build→resource: "workspace"(region near data, SP10 for dev)atlas-streams-build→resource: "connection"(for each source/sink/enrichment)Validate connections:
atlas-streams-discover→list-connections+inspect-connectionfor each — verify names match targets, present summary to userCall
search-knowledgeto validate field names. Fetch relevant examples from https://github.com/mongodb/ASP_exampleatlas-streams-build→resource: "processor"(with DLQ configured)atlas-streams-manage→start-processor(warn about billing)
Workflow Patterns
Incremental pipeline development (recommended): See references/development-workflow.md for the full 5-phase lifecycle.
Start with basic
$source→$mergepipeline (validate connectivity)Add
$matchstages (validate filtering)Add
$addFields/$projecttransforms (validate reshaping)Add windowing or enrichment (validate aggregation logic)
Add error handling / DLQ configuration
Modify a processor pipeline:
atlas-streams-manage→action: "stop-processor"— processor MUST be stopped firstatlas-streams-manage→action: "modify-processor"— provide new pipelineatlas-streams-manage→action: "start-processor"— restart
Debug a failing processor:
atlas-streams-discover→diagnose-processor— one-shot health report. Always call this first.Commit to a specific root cause. Match symptoms to diagnostic patterns:
Error 419 + "no partitions found" → Kafka topic doesn't exist or is misspelled
State: FAILED + multiple restarts → connection-level error (bypasses DLQ), check connection config
State: STARTED + zero output + windowed pipeline → likely idle Kafka partitions blocking window closure; add
partitionIdleTimeoutto Kafka$source(e.g.,{"size": 30, "unit": "second"})State: STARTED + zero output + non-windowed → check if source has data; inspect Kafka offset lag
High memoryUsageBytes approaching tier limit → OOM risk; recommend higher tier
DLQ count increasing → per-document errors; use MongoDB
findon DLQ collection See references/output-diagnostics.md for the full pattern table.
Classify processor type before interpreting output volume (alert vs transformation vs filter).
Provide concrete, ordered fix steps specific to the diagnosed root cause. Do NOT present a list of hypothetical scenarios.
If detailed logs are needed, direct the user to the Atlas UI: Atlas → Stream Processing → Workspace → Processor → Logs tab.
Chained processors (multi-sink pattern)
CRITICAL: A single pipeline can only have ONE terminal sink ($merge or $emit). When users request multiple output destinations (e.g., "write to Atlas AND emit to Kafka"), you MUST acknowledge the single-sink constraint and propose chained processors using an intermediate destination. See references/pipeline-patterns.md for the full pattern with examples.
Pre-Deploy & Post-Deploy Checklists
See references/development-workflow.md for the complete pre-deploy quality checklist (connection validation, pipeline validation) and post-deploy verification workflow.
Tier Sizing & Performance
See references/sizing-and-parallelism.md for tier specifications, parallelism formulas, complexity scoring, and performance optimization strategies.
Troubleshooting
See references/development-workflow.md for the complete troubleshooting table covering processor failures, API errors, configuration issues, and performance problems.
Billing & Cost
Atlas Stream Processing has no free tier. All deployed processors incur continuous charges while running.
Charges are per-hour, calculated per-second, only while the processor is running
stop-processorstops billing; stopped processors retain state for 45 days at no chargeFor prototyping without billing: Use
sp.process()in mongosh — runs pipelines ephemerally without deploying a processorSee
references/sizing-and-parallelism.mdfor tier pricing and cost optimization strategies
Safety Rules
atlas-streams-teardownandatlas-streams-managerequire user confirmation — do not bypassBEFORE calling
atlas-streams-teardownfor a workspace, you MUST first inspect the workspace withatlas-streams-discoverto count connections and processors, then present this information to the user before requesting confirmationBEFORE creating any processor, you MUST validate all connections per the "Pre-Deployment Validation" section in references/development-workflow.md
Deleting a workspace removes ALL connections and processors permanently
After stopping a processor, state is preserved 45 days — then checkpoints are discarded
resumeFromCheckpoint: falsedrops all window state — warn user firstMoving processors between workspaces is not supported (must recreate)
Dry-run / simulation is not supported — explain what you would do and ask for confirmation
Always warn users about billing before starting processors
Store API authentication credentials in connection settings, never hardcode in processor pipelines
Reference Files
| File | Read when... |
|---|---|
references/pipeline-patterns.md | Building or modifying processor pipelines |
references/connection-configs.md | Creating connections (type-specific schemas) |
references/development-workflow.md | Following lifecycle management or debugging decision trees |
references/output-diagnostics.md | Processor output is unexpected (zero, low, or wrong) |
references/sizing-and-parallelism.md | Choosing tiers, tuning parallelism, or optimizing cost |
Files
- ATTRIBUTION.mdAdded by AutoGineer865 B
- LICENSELicence file added by AutoGineer11.1 KiB
- SKILL.md19.4 KiB
- references/connection-configs.md12.8 KiB
- references/development-workflow.md15.0 KiB
- references/mcp-troubleshooting.md1.8 KiB
- references/output-diagnostics.md6.6 KiB
- references/pipeline-patterns.md16.1 KiB
- references/sizing-and-parallelism.md6.1 KiB
references/output-diagnostics.md
Processor Output Diagnostics Reference
The Problem
A user says "my processor isn't outputting anything" or "output seems low." Before assuming something is broken, you must classify the processor type — low output may be perfectly normal.
Processor Type Classification
Category 1: Alert / Anomaly Detection
Expected output: Low or zero most of the time. Spikes during anomalous events.
Examples:
Fraud detection (flags suspicious transactions)
Threshold alerting (temperature > 100, latency > 500ms)
Error monitoring (filters for error-level events)
Security alerting (unusual login patterns)
Green flags (healthy):
Zero output during normal conditions
Occasional bursts during genuine anomalies
DLQ is empty or near-empty
Red flags (problem):
Zero output during a known anomaly event
DLQ filling up with errors
Processor state is FAILED
Category 2: Data Transformation / Ingestion
Expected output: Roughly 1:1 with input volume. Output should be proportional to source.
Examples:
Format conversion (Kafka → Atlas)
Data enrichment (add fields, lookup)
Schema normalization
Archive pipelines (collection → collection)
Green flags (healthy):
Output volume roughly matches input volume
Consistent throughput over time
Red flags (problem):
Output is zero while source has data
Output is much lower than expected source volume
Growing backlog (source advancing but output not keeping up)
DLQ accumulating documents
Category 3: Filter / Quality Gate
Expected output: Variable — depends on match rate of filter criteria.
Examples:
Quality filtering (
$matchfor valid records)Data routing (priority-based splitting)
Deduplication
Sampling
Green flags (healthy):
Output is a consistent percentage of input
Percentage aligns with expected data quality/match rate
Red flags (problem):
Output drops to zero when source has data
Sudden change in output ratio without a data source change
DLQ filling up (filter errors, not just filtered-out data)
Diagnostic Workflow
Step 1: Classify the processor
Ask the user what the processor does, or inspect the pipeline:
atlas-streams-discover→inspect-processor— read the pipeline stages
Classification heuristics from pipeline:
Has
$matchwith narrow conditions (e.g.,severity > 8) → likely AlertPipeline is mostly
$addFields/$project/$merge→ likely Transformation$matchfilters broadly (e.g.,status: "active") → likely FilterHas
$tumblingWindowwith$matchinside → likely Alert (windowed anomaly detection)Has
$tumblingWindowwith$grouponly → likely Transformation (aggregation)
Step 2: Check processor state
atlas-streams-discover→diagnose-processorIf state is FAILED → the problem is not low output, it's a crash. See debugging trees in development-workflow.md.
Step 3: Check operational logs
For detailed logs, direct the user to the Atlas UI: Atlas → Stream Processing → Workspace → Processor → Logs tab
Operational logs contain runtime errors: Kafka producer/consumer failures, schema serialization issues, OOM events, connection timeouts
Step 4: Check DLQ
Use MongoDB
counttool on the DLQ collectionIf DLQ has documents → use MongoDB
findtool to inspect error messagesGrowing DLQ means documents are being rejected, not that nothing is flowing
Step 5: Check output collection
Use MongoDB
counttool on the output collectionUse MongoDB
findtool withsort: {"_id": -1}andlimit: 5to see most recent documentsCheck timestamps — are documents recent?
Step 6: Interpret based on processor type
| Processor type | Zero output | Low output | Action |
|---|---|---|---|
| Alert | Probably normal | Probably normal | Verify a known test event triggers output |
| Transformation | Problem — check connections, DLQ | Problem — check filters, DLQ | Debug pipeline and connections |
| Filter | Could be normal if no data matches | Could be normal | Verify filter criteria against actual source data |
Common Diagnostic Patterns
After running diagnose-processor, match the symptoms to these patterns:
| Symptom | Root Cause | Fix |
|---|---|---|
| Error 419 + "no partitions found" | Kafka topic doesn't exist or is misspelled | Verify topic name with Kafka broker; check connection config |
| State: FAILED + multiple restarts | Connection-level error (bypasses DLQ) | Check operational logs for repeated error; fix connection config or pipeline |
| State: STARTED + zero output + windowed pipeline | Idle Kafka partitions blocking window closure | Add partitionIdleTimeout to Kafka $source (e.g., {"size": 30, "unit": "second"}) |
| State: STARTED + zero output + non-windowed | Source has no data or filter too strict | Check if source (Kafka topic, collection) has data; review $match filters |
| High memoryUsageBytes approaching tier limit | OOM risk — window state or pipeline too large | Upgrade to higher tier (see sizing-and-parallelism.md) |
| DLQ count increasing | Per-document processing errors | Use MongoDB find on DLQ collection to inspect failed documents and error messages |
When providing fix steps:
Commit to a specific root cause based on the evidence
Do NOT present a list of hypothetical scenarios
Provide concrete, ordered steps (e.g., "stop → modify pipeline to add partitionIdleTimeout → restart with resumeFromCheckpoint: false")
Contextual Factors
Before concluding there's a problem, consider:
Time of day: Business-hours-only data sources produce nothing at night
Seasonality: Holiday periods, end-of-month spikes, etc.
Source health: Is the source (Kafka topic, collection) actually receiving data?
Window timing: Windowed processors only emit when the window closes — a 5-minute tumbling window outputs nothing for up to 5 minutes after start
Idle partitions: Kafka windows won't close if a partition has no data — check
partitionIdleTimeout
Best Practice: Document Expected Behavior
When creating processors, encourage users to use descriptive names that indicate the processor type:
| Name pattern | Type indication |
|---|---|
fraud-detector | Alert — low output expected |
order-enricher | Transformation — 1:1 output expected |
quality-filter | Filter — variable output expected |
iot-5min-rollup | Transformation — output every 5 min |
error-monitor | Alert — low output expected |
Requirements and compatibility
Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta
“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.
Needs: Needs an MCP server
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Attribution and licence
- Published by
- MongoDB
- Publisher
- MongoDB (Official)
- Source
- mongodb/agent-skills · skills/mongodb-atlas-stream-processing · commit 155bb9c
- Licence
- Apache License 2.0 (redistribution allowed)
- LICENSE (added by AutoGineer from LICENSE)
- ATTRIBUTION.md (written by AutoGineer)
- Synced
- Also distributed in
- mongodb/agent-skills, mongodb/agent-skills
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