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Matlab Analyze Time Frequency Content

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From the author

Perform time-frequency analysis in MATLAB using CWT, STFT, synchrosqueezing, reassignment, wavelet coherence, cross spectrogram, EMD/VMD, multiresolution analysis, and time-frequency filtering. Triggers on: time-frequency, spectrogram, scalogram, cwt, stft, istft, fsst, wsst, wcoherence, xspectrogram, modwt, modwtmra, modwpt, emd, vmd, hht, tffilt, dgt, gabor, instantaneous frequency, synchrosqueezing, reassignment, ridge extraction, wavelet coherence, cross spectrum, mode decomposition, signal decomposition, time-frequency filtering.
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AutoGineer summary

Written by AutoGineer from the skill’s own files, not by the author

This skill provides a comprehensive framework for analyzing how frequency content evolves over time using MATLAB. It covers a wide range of analytical techniques including Short-Time Fourier Transform (STFT), Continuous Wavelet Transform (CWT), synchrosqueezing, reassignment, and adaptive signal decomposition (EMD/VMD). The skill is designed to help users select the appropriate method based on their specific signal characteristics and research goals, offering guidance on visualization, mode extraction, and cross-signal analysis.

What it does

  • Visualizes time-frequency content using spectrograms and scalograms.
  • Supports advanced signal decomposition via EMD, VMD, and multiresolution analysis.
  • Enables mode extraction and signal reconstruction from time-frequency representations.
  • Computes time-varying coherence and cross-spectra between two signals.
  • Provides diagnostic tools to assess signal properties before analysis.
  • Offers a decision logic for choosing between STFT, CWT, and other transform methods.

When to use it

  • When you need to analyze the evolution of frequency content over time.
  • When choosing between different time-frequency representations like STFT or CWT.
  • When you need to extract and reconstruct individual signal components.
  • When comparing two signals using time-varying coherence or cross-spectrum analysis.
  • When decomposing signals into additive time-domain components.

Advantages

  • Provides a structured decision tree for selecting the optimal analysis method.
  • Includes diagnostic scripts to assess signal length, bandwidth, and nonstationarity.
  • Supports both interactive exploration and programmatic data analysis.
  • Clearly distinguishes between invertible and non-invertible analysis techniques.
  • Offers specific guidance on handling boundary effects and frequency resolution.

Usage examples

“How do I visualize the time-frequency content of a non-stationary signal?”
The agent will recommend using signalAnalyzer for interactive exploration or cwt for multi-resolution visualization, depending on the signal's bandwidth.
“I need to extract a specific mode from my signal using synchrosqueezing.”
The agent will guide you through the fsst or wsst workflow, including ridge extraction and subsequent signal reconstruction.
“How can I compare the time-varying coherence of two signals?”
The agent will provide the wcoherence syntax and explain how to interpret the phase arrows and coherence magnitude.
“What is the best way to decompose a signal into adaptive components?”
The agent will recommend emd or vmd based on whether the number of components is known and provide the necessary function calls.

Install

Documentation by MathWorks

Time-Frequency Analysis in MATLAB

Analyze how frequency content evolves over time using STFT, CWT, synchrosqueezing, reassignment, cross-signal methods, and data-adaptive decomposition.

Agent directive: Consult the reference guides in references/ before answering. Each guide covers a specific domain with syntax, gotchas, and common mistakes.

When To Use

  • Analyzing how frequency content evolves over time (spectrogram, scalogram)

  • Choosing between STFT, CWT, synchrosqueezing, reassignment, or EMD/VMD

  • Extracting and reconstructing individual signal components from a TF representation

  • Computing time-varying coherence or cross-spectrum between two signals

  • Decomposing signals into additive time-domain components (wavelet MRA, EMD, VMD)

  • Estimating instantaneous frequency or Hilbert spectrum

When Not To Use

  • Designing or applying classical FIR/IIR filters — use matlab-design-digital-filter

  • Extracting scalar features for ML classification — use matlab-extract-signal-features

  • Signal preprocessing (resampling, detrending, gap filling) — use matlab-prepare-signal-data

  • Quadratic/bilinear TFDs (Wigner-Ville) — not supported in MATLAB toolboxes

  • Audio-specific representations (mel spectrogram, MFCC) — use Audio Toolbox

Method Selection

Choose the analysis method based on the user's goal and signal characteristics:

GoalMethodGuide
Interactive TF exploration (spectrogram + scalogram)signalAnalyzer—
General TF visualization (uniform freq resolution)stft, spectrogram, pspectrumreferences/stft-guide.md
TF visualization (multi-resolution, constant-Q)cwt, cwtfilterbankreferences/cwt-guide.md
Sharpest TF picture (non-invertible)spectrogram("reassigned"), pspectrum(Reassigned=true)references/reassignment-guide.md
Remove specific TF regions (mask-based filtering)tffilt with binary maskreferences/stft-guide.md
Mode extraction + reconstruction (STFT domain)fsst → tfridge → ifsstreferences/reassignment-guide.md
Mode extraction + reconstruction (CWT domain)wsst → wsstridge → iwsstreferences/reassignment-guide.md
Signal reconstruction from CWTicwt (exact or approximate)references/cwt-guide.md
Additive decomposition (octave bands)modwt + modwtmrareferences/multiresolution-guide.md
Additive decomposition (uniform bands)modwptdetailsreferences/multiresolution-guide.md
Adaptive decomposition (unknown components)emdreferences/multiresolution-guide.md
Adaptive decomposition (known mode count)vmdreferences/multiresolution-guide.md
Hilbert spectrum / instantaneous frequencyhht, instfreqreferences/multiresolution-guide.md
Time-varying coherence between two signalswcoherencereferences/cross-analysis-guide.md
Cross spectrogram between two signalsxspectrogramreferences/cross-analysis-guide.md
Global coherence (no time axis)mscohere, cpsdreferences/cross-analysis-guide.md

For detailed decision logic, see references/method-selection-guide.md.

Quick Decision Tree

What is the primary goal?
│
├── Interactive exploration (adjust parameters, compare views)
│   └── signalAnalyzer — supports spectrogram + scalogram (CWT) side by side
│
├── Visualize one signal's TF content
│   ├── Need uniform frequency resolution? → stft / spectrogram / pspectrum
│   ├── Need multi-resolution (better low-freq)? → cwt
│   └── Need sharpest picture (no reconstruction)? → spectrogram("reassigned")
│
├── Remove unwanted content visible in spectrogram
│   └── Define binary mask over TF plane → tffilt (Gabor domain)
│
├── Extract and reconstruct individual components
│   ├── From TF representation (invertible)?
│   │   ├── STFT domain → fsst → tfridge → ifsst
│   │   └── CWT domain → wsst → wsstridge → iwsst
│   ├── Additive time-domain components?
│   │   ├── Octave bands → modwt + modwtmra
│   │   ├── Uniform bands → modwptdetails
│   │   └── Data-adaptive → emd or vmd
│   └── From CWT directly? → icwt (see references/cwt-guide.md)
│
├── Compare two signals
│   ├── Time-varying coherence? → wcoherence
│   ├── Time-varying cross-spectrum? → xspectrogram
│   └── Global relationship? → mscohere / cpsd
│
└── Estimate instantaneous frequency
    ├── Single monocomponent signal? → instfreq(x, fs)
    ├── Multicomponent (want per-mode IF)? → emd → instfreq(imf, fs)
    └── Multicomponent (want single average)? → instfreq(x, fs, Method="tfmoment")

Critical Rules

  1. stft has no reassignment option. Use fsst for invertible synchrosqueezing or spectrogram("reassigned") for non-invertible visualization.

  2. wsstridge argument order differs from tfridge:

    • wsstridge(sst, penalty, f, ...) — penalty is 2nd positional arg

    • tfridge(tfm, f, penalty, ...) — penalty is 3rd positional arg

  3. wsst subtracts the signal mean internally. iwsst does NOT restore it. Add mean(x) back manually if DC matters.

  4. ifsst is machine-precision; iwsst is approximate (Morlet single-integral formula).

  5. xspectrogram first output is real (cross-spectrogram magnitude). For phase, use the 4th output P. This differs from spectrogram whose first output is complex STFT.

  6. wcoherence has no Parent option. For App Designer, compute outputs and plot manually.

  7. wcoherence phase arrows show the phase lag of Y relative to X:

    • ↑ = Y lags X by π/2

    • ↓ = Y leads X by π/2

    • → = in-phase

    • ← = anti-phase PhaseDisplayThreshold (default 0.5) is plot-only — it controls which arrows are drawn but has no effect on returned numeric outputs.

  8. hht takes IMFs, not raw signal. Always decompose first: imf = emd(x); hht(imf, fs).

  9. instfreq Hilbert method is meaningless for multicomponent signals. Decompose first, or use Method="tfmoment" for a single average curve.

  10. Synchrosqueezing is precision-sensitive. Use double-precision data with fsst/wsst for reproducible results across MATLAB, codegen, and GPU.

Signal Assessment Workflow

When the user provides a signal and asks "what should I use?", run the assessment script then apply agent-side interpretation:

Step 1: Run MATLAB assessment
report = assessSignalForTF(x, fs);
disp(report)
disp(report.recommendations)

The script returns: signal length, occupied bandwidth, number of spectral peaks (with frequencies), nonstationarity indicator, DC content, precision, and auto-generated recommendations.

Step 2: Agent-side interpretation (combine script output with user goals)
User GoalKey Report FieldsRecommendation Logic
"Explore / I'm not sure what I need"—Suggest signalAnalyzer for interactive exploration (spectrogram + scalogram views, adjustable parameters)
"Visualize frequency content over time"likelyNonstationary, fractionalBandwidthIf wideband (>2 octaves): cwt. If narrowband or uniform resolution needed: stft/spectrogram
"Separate/extract components"numSpectralPeaks, peakFrequenciesHz2–3 peaks: synchrosqueezing (fsst/wsst). Many peaks: emd/vmd. Closely-spaced: modwptdetails or fsst
"Reconstruct after filtering"hasDC, precisionfsst/ifsst for exact. wsst/iwsst for CWT-domain (warn about mean). icwt for CWT bandpass
"Compare two signals"(run on both)wcoherence for coherence. xspectrogram for cross-spectrum
"Detect transients/events"signalLength, occupiedBandHzcwt with low TimeBandwidth. Or short-window stft
Step 3: Refine with follow-up questions if ambiguous
  • "Do you need to reconstruct the signal, or just visualize?"

  • "Do you need uniform frequency resolution, or is multi-resolution acceptable?"

  • "Are you comparing this signal to another?"

Reference Guides

FileCoverage
references/stft-guide.mdstft/istft, spectrogram, pspectrum, stftmag2sig, length preservation, COLA
references/cwt-guide.mdcwt, cwtfilterbank, icwt, dlicwt/icwtLayer, boundary, constant-Q
references/reassignment-guide.mdfsst/ifsst, wsst/iwsst, spectrogram("reassigned"), pspectrum(Reassigned=true), ridge extraction, penalty
references/cross-analysis-guide.mdwcoherence, xspectrogram, cpsd, mscohere, phase arrows, unsmoothed cross-spectrum
references/multiresolution-guide.mdmodwt/modwtmra, modwpt/modwptdetails, emd, vmd, hht, instfreq, instbw
references/method-selection-guide.mdDecision logic for choosing among all methods

Toolbox Requirements

ToolboxFunctions
Signal Processingstft, istft, spectrogram, pspectrum, fsst, ifsst, tfridge, xspectrogram, instfreq, instbw, stftmag2sig, cpsd, mscohere
Waveletcwt, cwtfilterbank, icwt, wsst, iwsst, wsstridge, wcoherence, modwt, modwtmra, modwpt, modwptdetails, emd, vmd, hht, tffilt, dgt
FunctionAvailable FromNote
tffiltR2025aTF mask-based filtering; all other functions available in R2024b

Documentation References


Copyright 2026 The MathWorks, Inc.


Files

references/reassignment-guide.md

Time-Frequency Reassignment Guide

Overview

Reassignment techniques sharpen time-frequency representations by moving energy from each analysis bin to a more precise location. Two fundamentally different approaches exist:

  1. Full reassignment (time + frequency) — produces the sharpest visual picture but is not invertible. Energy is displaced in both axes, destroying the structure needed for reconstruction.

  2. Synchrosqueezing (frequency only) — reassigns energy only along the frequency axis toward instantaneous frequency. Because the time axis is untouched, the transform remains invertible — individual oscillatory modes can be extracted and reconstructed.

Choose full reassignment for visualization and detection. Choose synchrosqueezing when you need to extract and reconstruct individual signal components.

Function Landscape

FunctionDomainTypeInvertibleToolbox
fsstSTFTSynchrosqueezingYes (ifsst) — machine precisionSignal Processing
wsstCWTSynchrosqueezingYes (iwsst) — approximate (Morlet formula)Wavelet
spectrogram(..., "reassigned")STFTFull reassignmentNoSignal Processing
pspectrum(..., Reassigned=true)STFTFull reassignmentNoSignal Processing

No reassignment option exists for:

  • stft / istft — use fsst instead for STFT-domain synchrosqueezing

  • cwt — use wsst instead for CWT-domain synchrosqueezing

When to Use

  • Visualization only (sharpest picture): spectrogram("reassigned") or pspectrum(Reassigned=true)

  • Mode extraction + reconstruction (STFT domain): fsst → tfridge → ifsst

  • Mode extraction + reconstruction (CWT domain): wsst → wsstridge → iwsst

Full Reassignment: spectrogram / pspectrum

Full reassignment displaces each STFT coefficient to the local centroid of the Wigner-Ville distribution — both in time (group delay) and frequency (instantaneous frequency). The result is maximally concentrated but non-invertible.

spectrogram (reassigned)
[s, f, t] = spectrogram(x, window, noverlap, nfft, fs, "reassigned");
  • Returns reassigned time-frequency matrix directly

  • Same window/overlap/nfft interface as standard spectrogram

  • The "reassigned" flag is a trailing positional argument

pspectrum (reassigned)
[p, f, t] = pspectrum(x, fs, "spectrogram", Reassigned=true);
  • Name-value syntax: Reassigned=true

  • Built-in resolution/leakage controls via FrequencyResolution, Leakage

  • Output is power spectrum (not complex STFT coefficients)

Limitations
  • Not invertible — cannot reconstruct individual signal components

  • Ridge extraction still works — use tfridge on the reassigned matrix for instantaneous frequency estimation, but you cannot invert back to time domain from the reassigned representation alone

  • Useful for detection, classification, and visualization — not for signal separation

STFT Synchrosqueezing: fsst / ifsst

Forward Transform
[sst, f, t] = fsst(x, fs);            % default: Kaiser(256, beta=10)
[sst, f, t] = fsst(x, fs, window);    % custom window
fsst(x, fs);                           % no outputs → auto-plot

Key constraints:

  • Overlap is always window_length - 1 (hop = 1 sample) — not configurable

  • nfft = window_length — DFT length equals window length

  • Real input → one-sided spectrum; complex input → two-sided centered spectrum

Inverse Transform
xrec = ifsst(sst);                         % full reconstruction
xrec = ifsst(sst, window, f, [flo fhi]);   % frequency-range reconstruction
xrec = ifsst(sst, window, iridge);         % mode extraction via ridge
xrec = ifsst(sst, [], iridge, NumFrequencyBins=4);  % control bandwidth around ridge
  • Full reconstruction is machine-precision (~1e-14 error)

  • Window must match the forward fsst call

  • Ridge-based extraction: pass iridge from tfridge

Ridge Extraction with tfridge
[fridge, iridge] = tfridge(sst, f, penalty);
[fridge, iridge] = tfridge(sst, f, penalty, NumRidges=2);
  • tfridge is generic — works on any TF matrix (fsst, spectrogram, wsst, etc.)

  • Default penalty = 0 (no smoothing)

CWT Synchrosqueezing: wsst / iwsst

Forward Transform
[sst, f] = wsst(x, fs);                    % default: amor wavelet, VoicesPerOctave=32
[sst, f] = wsst(x, fs, 'bump');            % specify wavelet
[sst, f, fbparam] = wsst(x, fs, 'bump', VoicesPerOctave=32);
wsst(x, fs);                                % no outputs → auto-plot

Key details:

  • Only accepts real-valued signals

  • Default wavelet is "amor" (not Morse like cwt)

  • VoicesPerOctave must be even, range 10–48, default 32

  • Subtracts the signal mean before analysis internally

  • Supports Boundary: "periodic" (default), "reflection", "zeropad"

Inverse Transform
xrec = iwsst(sst);                              % full reconstruction (approximate)
xrec = iwsst(sst, 'bump');                      % specify wavelet (must match forward)
xrec = iwsst(sst, iridge);                      % mode extraction
xrec = iwsst(sst, iridge, NumFrequencyBins=16); % control bandwidth
xrec = iwsst(sst, f, [flo fhi]);                % frequency-range reconstruction
  • Reconstruction is approximate — uses Morlet single-integral formula (2/Rpsi * real(sum(sst,1)))

  • Wavelet must match between wsst and iwsst

  • Default NumFrequencyBins = 16 (half of default VoicesPerOctave=32)

  • wsst subtracts the mean but iwsst does NOT add it back — user must add mean(x) if needed

Ridge Extraction with wsstridge
[fridge, iridge] = wsstridge(sst, penalty, f, NumRidges=2);
  • wsstridge is wsst-specific — handles filter bank parameters and log-spaced frequency

  • Penalty is the 2nd positional argument (before f)

  • Calls the same underlying engine as tfridge: signalwavelet.internal.tfridge.extractRidges

Penalty Term for Ridge Extraction

Why It's Needed

Without a penalty, the ridge extraction is purely greedy — it picks the bin with maximum energy at each time step. When a component's amplitude dips below competing energy (noise, another mode), the ridge jumps to the wrong frequency.

When to Use
  • Multiple ridges (NumRidges > 1) — almost always needed to prevent cross-assignment between modes

  • Single modulated component in noise — prevents jumping to noise peaks during amplitude dips

  • FM signals — prevents short-cutting across rapid frequency excursions

How It Works

The penalty adds cost penalty × (distance_in_bins)² for changing frequency between adjacent time steps. This trades energy-maximization against trajectory smoothness.

The penalty operates in bins, not Hz. For wsst (log-spaced bins), the physical frequency change per bin varies with frequency. For fsst (linear bins), it's uniform.

Value Selection

No automatic method exists. Start with penalty = 5 and adjust:

  • Too low → ridge still jumps between modes

  • Too high → over-smooths, can't track legitimate rapid frequency changes (FM content)

Synchrosqueezing Can Rescue CWT's Constant-Q Limitation

CWT's constant-Q property means bandwidth grows with frequency — closely-spaced high-frequency tones get smeared together. wsst can partially rescue this by concentrating the smeared energy back toward the true instantaneous frequencies.

% DTMF tones: CWT smears high-freq group, wsst sharpens them
[sst, f] = wsst(tones, Fs, 'bump');

Decision hierarchy:

  1. Tones well-separated relative to bandwidth → raw cwt works

  2. Tones moderately close → wsst sharpens enough to resolve

  3. Tones within 2Δ of each other → synchrosqueezing also fails → use stft/fsst

Resolvability Condition

For synchrosqueezing (both fsst and wsst) to resolve two modes:

|φ₁'(t) - φ₂'(t)| > 2Δ

where:

  • φ'(t) = instantaneous frequency of each mode

  • Δ = bandwidth of the analysis wavelet/window at that frequency

Implications:

  • Parallel chirps with constant separation: resolvable if separation > 2Δ everywhere

  • Crossing chirps: always unresolvable at the crossing point (IF difference = 0)

  • For CWT/wsst (constant-Q): Δ grows with frequency → harder to resolve at high frequencies

  • For STFT/fsst: Δ is fixed by window → uniform resolving ability

Precision Sensitivity

The synchrosqueezing algorithm reassigns energy to the nearest frequency bin based on estimated instantaneous frequency. In single precision, rounding at bin boundaries causes off-by-one differences in reassignment.

Affected scenarios:

  • Code generation (C/C++ via MATLAB Coder) — results may differ from MATLAB

  • GPU arrays (Parallel Computing Toolbox) — floating-point order-of-operations differs from CPU

Recommendation: Use double-precision data with fsst/wsst when:

  • Comparing results across MATLAB, codegen, and GPU

  • Ridge extraction must be reproducible

  • Mode reconstruction fidelity matters

Complete Workflow: Mode Extraction

STFT-based (fsst)
% 1. Compute synchrosqueezed STFT
[sst, f, t] = fsst(x, fs, kaiser(256, 10));

% 2. Extract ridges with penalty
[fridge, iridge] = tfridge(sst, f, 5, NumRidges=2);

% 3. Reconstruct individual modes
xmode1 = ifsst(sst, kaiser(256, 10), iridge(:,1));
xmode2 = ifsst(sst, kaiser(256, 10), iridge(:,2));
CWT-based (wsst)
% 1. Compute synchrosqueezed CWT
[sst, f] = wsst(x, fs, 'bump');

% 2. Extract ridges with penalty
[fridge, iridge] = wsstridge(sst, 5, f, NumRidges=2);

% 3. Reconstruct individual modes
xrec = iwsst(sst, iridge);
xmode1 = xrec(:,1);
xmode2 = xrec(:,2);

Common Mistakes

MistakeWhy It's WrongCorrect Approach
Using stft and expecting reassignmentstft has no reassignment optionUse fsst for invertible synchrosqueezing, or spectrogram("reassigned") for visualization
Omitting penalty with NumRidges > 1Ridges jump between modes at energy crossingsAlways use penalty ≥ 1 when extracting multiple ridges
Expecting iwsst to give exact reconstructioniwsst uses Morlet single-integral (approximate)Accept the approximation, or use fsst/ifsst for machine-precision reconstruction
Forgetting to add back the mean after iwsstwsst internally subtracts mean(x) but iwsst doesn't restore itAdd mean(x) to the reconstruction if DC level matters
Using single precision with fsst/wsstOff-by-one bin reassignment differences vs doubleUse double precision for reproducible results across MATLAB/codegen/GPU
Expecting synchrosqueezing to resolve modes within 2ΔResolvability condition requires IF separation > 2× bandwidthIf modes are too close, switch to STFT with narrow window
Using wsstridge(sst, f, penalty, ...)Penalty is the 2nd argument for wsstridge, before fwsstridge(sst, penalty, f, NumRidges=n)
Using tfridge(tfm, f) without penalty for FM signalsFM components have time-varying frequency — greedy search jumpsAdd penalty: tfridge(tfm, f, penalty)

Documentation References


Copyright 2026 The MathWorks, Inc.


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MathWorks
Publisher
MathWorks (Official)
Source
matlab/matlab-agentic-toolkit · skills-catalog/signal-processing/matlab-analyze-time-frequency-content · commit 2a7f215
Licence
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  • LICENSE (added by AutoGineer from LICENSE.md)
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