Pymc
K-DenseCommunityCreated by K-Dense Inc.
- Skill
- Tool integration
- Science and research
- MIT
- Low risk
- Has scripts
AutoGineer summary
Written by AutoGineer from the skill’s own files, not by the author
This skill provides a structured environment for Bayesian modeling using PyMC 6.3.2. It covers the full lifecycle of probabilistic analysis, including model definition, prior predictive checks, MCMC sampling via NUTS, and posterior diagnostics. The skill includes helper scripts for evaluating model convergence, performing PSIS-LOO model comparison, and generating diagnostic reports, ensuring that users can rigorously assess uncertainty and predictive performance.
What it does
- Defines generative Bayesian models with scientifically calibrated priors.
- Executes NUTS MCMC sampling for posterior inference.
- Performs prior and posterior predictive checks to validate model assumptions.
- Provides diagnostic tools for assessing convergence, including R-hat and ESS.
- Facilitates model comparison using PSIS-LOO and predictive model averaging.
- Includes templates for linear, hierarchical, and count-based regression models.
When to use it
- When performing probabilistic modeling and uncertainty quantification.
- When comparing multiple candidate models for predictive performance.
- When analyzing grouped or hierarchical data structures.
- When you need to validate model convergence beyond simple visual inspection.
- When building custom Bayesian models requiring specific likelihoods or priors.
Advantages
- Integrates standard diagnostic workflows to identify sampling issues.
- Supports complex hierarchical structures and non-centered parameterizations.
- Provides robust model comparison metrics using ArviZ 1.3.
- Encourages reproducible research by tracking seeds and data provenance.
- Includes pre-built templates for common statistical modeling patterns.
Usage examples
- “Run the hierarchical model template with 2 chains.”
- Executes the hierarchical_model_template.py script using uv, generating posterior samples and diagnostic artifacts in the specified output directory.
- “Check my model diagnostics for parameters alpha and beta.”
- Runs the check_diagnostics helper on your inference data, reporting R-hat, ESS, and any sampler-specific warnings like divergences.
- “Compare my linear and robust models using LOO.”
- Uses the compare_models helper to rank models by ELPD and provides a reliability check for the PSIS-LOO estimates.
Install
Download the skill as a ZIP:
https://autogineer.com/agent-skills/k-dense-ai/pymc/downloadUnzip it into the cross-client skills folder of your project:
mkdir -p .agents/skills && unzip pymc.zip -d .agents/skills
Documentation by K-Dense Inc.
PyMC Bayesian Modeling
Version and scope
Targets PyMC 6.3.2, PyTensor 3.3.2, and ArviZ 1.3.0. These are local Python APIs, with no service endpoint, credentials, or remote inference required. The native tests use the PyMC NUTS sampler on small synthetic models. Optional nutpie/JAX samplers, SMC, and production-scale convergence are not validated by those tests. Record the complete resolved environment, backend, seeds, preprocessing, and data provenance for a scientific run.
Local macOS validation used PYTENSOR_FLAGS="cxx=" after the C linker failed
with library 'd64' not found; this disables PyTensor C compilation for that
process. The Python library workflows passed under that setting; it does not
establish that the C backend works on this host.
ArviZ 1 splits into base/stats/plots packages, re-exported by import arviz as az.
PyMC returns an xarray DataTree despite the legacy return_inferencedata option
name. az.summary(..., round_to="none") returns numerical columns; the default
formats for display. Use az.plot_ppc_dist, az.plot_dist, and
az.plot_trace_dist; save their returned PlotCollection, not a separate pyplot
figure. az.hdi(..., prob=.95) uses prob, with bounds along ci_bound.
Workflow
Define the estimand and predictive unit: another measurement, a new patient or group, or a future time block. Preserve units, missingness assumptions and grouping. Fit any scaling only on training data; reject constant columns.
Build a generative model with scientifically calibrated priors and named dimensions. Check likelihood support, finite initial log probability, design rank, confounding and symmetries before sampling.
Run a prior predictive check and inspect domain-relevant summaries before fitting. A broad prior is not automatically noninformative or plausible.
Fit several independent chains with explicit seeds. For reproducible backend selection use
nuts_sampler="pymc"; the automatic choice can prefer installed nutpie.nuts={...}replaces deprecatednuts_sampler_kwargs.Inspect rank R-hat, bulk/tail ESS, estimand-specific MCSE, divergences, energy BFMI and sampler-specific tree depth. Fix geometry and initialization before simply increasing draws. A clean screen does not prove convergence.
Generate posterior predictive replicates and inspect residual structure, tails, zeros, group effects and time dependence relevant to the question. In-sample agreement is not external validation or parameter identifiability.
Compare prior sensitivity and parameter recovery on synthetic data. Weakly informed scales, correlated parameters, separated logistic data, or mixture label switching can survive good MCMC diagnostics. A proper prior may make a posterior finite without the likelihood identifying its parameters.
Predict using the correct training transform and uncertainty levels. Keep
predictionsseparate from in-sampleposterior_predictive. Restore model data before recomputing training likelihoods.
See standard_workflow.md for a complete bounded API smoke example, workflows.md for missing values, scaling, predictive scoring and serialization, and model_patterns.md for model structures.
Runnable templates
From the skill directory, run the synthetic linear or hierarchical template:
uv run --isolated --with "pymc==6.3.2" --with "arviz==1.3.0" --with "pytensor==3.3.2" --with matplotlib --with pandas --with h5netcdf --with h5py python assets/linear_regression_template.py --draws 80 --tune 80 --chains 2 --output-dir linear_smoke
uv run --isolated --with "pymc==6.3.2" --with "arviz==1.3.0" --with "pytensor==3.3.2" --with matplotlib --with pandas --with h5netcdf --with h5py python assets/hierarchical_model_template.py --draws 80 --tune 80 --chains 2 --output-dir hierarchical_smokeThese short commands intentionally test execution and artifacts; they are not adequate evidence of converged scientific estimates. For a real analysis, inspect priors before fitting and budget chains/draws around diagnostics and required MCSE. The templates default to four chains and longer runs, but those counts are not acceptance criteria by themselves.
The hierarchical template predicts an unseen group by drawing group effects from every hyperposterior draw, sharing each group effect across that group's new rows, then adding observation noise. Using only population means omits between-group uncertainty. Centered, non-centered, and partial parameterizations can each be appropriate; non-centering is not universally superior.
Diagnostic and comparison helpers
Import the modules from this skill's scripts/ directory (add that directory to
sys.path when working elsewhere). Example fragments below assume fitted data:
from scripts.model_diagnostics import check_diagnostics, create_diagnostic_report
result = check_diagnostics(idata, var_names=["alpha", "beta", "sigma"])
create_diagnostic_report(idata, var_names=["alpha", "beta", "sigma"], output_dir="diagnostics")check_diagnostics flags nonfinite statistics and insufficient chains. It reports
missing HMC statistics as unavailable rather than claiming zero divergences.
It uses recorded reached_max_treedepth, or an explicit max_treedepth matching
the actual sampler; never infer the configured limit from the maximum observed
value. The default ESS floor of 400 is pooled across chains, a screening floor,
not a universal precision target. BFMI below 0.3 is a warning heuristic.
from scripts.model_comparison import compare_models, check_loo_reliability, model_averaging
models = {"linear": idata_linear, "robust": idata_robust}
check_loo_reliability(models, var_name="y_obs")
comparison = compare_models(models, var_name="y_obs")
mixture_draws, weights = model_averaging(models, var_name="y_obs", random_seed=42)Compute pointwise log likelihood while the model contains the training data:
pm.compute_log_likelihood(idata, model=model). Passing log_likelihood
through idata_kwargs still works in 6.3.2 but now emits a deprecation warning. ArviZ 1 az.compare ranks
PSIS-LOO ELPD and has no ic= argument. The helper retains ic="loo" as an
explicit compatibility option. WAIC is separate and is not a remedy for failed
PSIS diagnostics. Use each LOO result's good_k threshold, refit influential
holdouts or choose structured cross-validation when needed.
Comparisons require identical outcomes, ordering, scale, likelihood measure and predictive unit. A higher ELPD is preferable for that target; inspect paired score uncertainty and diagnostics before ranking. Stacking weights are predictive combination weights, not posterior model probabilities.
Version 2 behavior change: model_averaging now samples a predictive mixture
with shape (sample, *prediction_dimensions), preserving both within-model and
between-model variation. It returns weights in input model order and rejects
missing/misaligned predictions or invalid weights. Pointwise averages of paired
posterior draws are not draws from a mixture. Use an explicit group="predictions"
for new data; the default is posterior_predictive.
Distribution and inference choices
Continuous outcomes: Normal or Student-t with scale calibrated to units.
Counts: Poisson for equidispersion, NegativeBinomial for overdispersion; audit the zero-generating mechanism before adding a hurdle or zero-inflation term.
Binary outcomes: Bernoulli with
logit_p; priors must remain plausible on the probability scale, especially under separation.Positive scales: HalfNormal, Exponential or Gamma with domain-specific scales.
Covariance:
LKJCholeskyCov; ordinarydimslabels do not align PyTensor math.VI:
pm.fitprovides approximations that can miss modes and underestimate uncertainty. Finite ELBO and good ESS on approximation draws do not establish posterior accuracy. Compare against MCMC on a feasible representative model.
See distributions.md for parameter conventions and sampling_inference.md for NUTS, discrete sampling, variational inference, prediction semantics and limitations.
Primary sources
Reviewed 2026-10-01: PyMC sampling, data containers, forward sampling source, ArviZ LOO, comparison, predictive plots.
Citing Scientific Agent Skills
This skill is part of Scientific Agent Skills by K-Dense. If it materially contributed to a manuscript, report, presentation, or code release, add the paper to the references or software section and tell the user you did so:
Kassis, T., Agarwal, V., He, Y., Patel, D., & Brueckner, A. M. (2026). Scientific Agent Skills: A Library of Procedural Knowledge for Research Agents. arXiv:2609.00065. https://doi.org/10.48550/arXiv.2609.00065
Always cite the current version. The DOI and https://arxiv.org/abs/2609.00065 resolve to the
latest arXiv version, so never append a version suffix such as v1. When network access is
available, fetch https://arxiv.org/abs/2609.00065 (or
http://export.arxiv.org/api/query?id_list=2609.00065) before writing the reference and take
the author list, year, and version from that record. If the record lists a journal reference
or publisher DOI, cite the published version instead.
Files
- ATTRIBUTION.mdAdded by AutoGineer959 B
- LICENSELicence file added by AutoGineer1.0 KiB
- SKILL.md10.5 KiB
- assets/hierarchical_model_template.pyScript5.7 KiB
- assets/linear_regression_template.pyScript4.6 KiB
- references/distributions.md14.5 KiB
- references/model_patterns.md4.5 KiB
- references/sampling_inference.md7.9 KiB
- references/standard_workflow.md4.8 KiB
- references/workflows.md7.6 KiB
- scripts/model_comparison.pyScript14.4 KiB
- scripts/model_diagnostics.pyScript9.0 KiB
references/distributions.md
PyMC Distributions Reference
Targets PyMC 6.3.2, reviewed 2026-10-01. This reference provides a selected catalog of probability distributions available in PyMC, organized by category. Use this to select appropriate distributions for priors and likelihoods when building Bayesian models.
Continuous Distributions
Continuous distributions define probability densities over real-valued domains.
Common Continuous Distributions
pm.Normal(name, mu, sigma)
Normal (Gaussian) distribution
Parameters:
mu(mean),sigma(standard deviation)Support: (-∞, ∞)
Common uses: Default prior for unbounded parameters, likelihood for continuous data with additive noise
pm.HalfNormal(name, sigma)
Half-normal distribution (positive half of normal)
Parameters:
sigma(underlying Normal scale; not the half-normal standard deviation)Support: [0, ∞)
Common uses: Prior for scale/standard deviation parameters
pm.Uniform(name, lower, upper)
Uniform distribution
Parameters:
lower,upper(bounds)Support: [lower, upper]
Common uses: Weakly informative prior when parameter must be bounded
pm.Beta(name, alpha, beta)
Beta distribution
Parameters:
alpha,beta(shape parameters)Support: [0, 1]
Common uses: Prior for probabilities and proportions
pm.Gamma(name, alpha, beta)
Gamma distribution
Parameters:
alpha(shape),beta(rate)Support: (0, ∞)
Common uses: Prior for positive parameters, rate parameters
pm.Exponential(name, lam)
Exponential distribution
Parameters:
lam(rate parameter)Support: [0, ∞)
Common uses: Prior for scale parameters, waiting times
pm.LogNormal(name, mu, sigma)
Log-normal distribution
Parameters:
mu,sigma(parameters of underlying normal)Support: (0, ∞)
Common uses: Prior for positive parameters with multiplicative effects
pm.StudentT(name, nu=nu, mu=mu, sigma=sigma)
Student's t-distribution
Parameters:
nu(degrees of freedom),mu(location),sigma(scale)Support: (-∞, ∞)
Common uses: Robust alternative to normal for outlier-resistant models
pm.Cauchy(name, alpha, beta)
Cauchy distribution
Parameters:
alpha(location),beta(scale)Support: (-∞, ∞)
Common uses: Heavy-tailed alternative to normal
pm.HalfStudentT(name, nu, sigma)
Positive half-Student-t distribution
Common uses: Heavy-tailed prior for scale parameters
Specialized Continuous Distributions
pm.Laplace(name, mu, b) - Laplace (double exponential) distribution
pm.AsymmetricLaplace(name, kappa, mu, b) - Asymmetric Laplace distribution
pm.InverseGamma(name, alpha, beta) - Inverse gamma distribution
pm.Weibull(name, alpha, beta) - Weibull distribution for reliability analysis
pm.Logistic(name, mu, s) - Logistic distribution
pm.LogitNormal(name, mu, sigma) - Logit-normal distribution for (0,1) support
pm.Pareto(name, alpha, m) - Pareto distribution for power-law phenomena
pm.ChiSquared(name, nu) - Chi-squared distribution
pm.ExGaussian(name, mu=mu, sigma=sigma, nu=nu) - Exponentially modified Gaussian
pm.VonMises(name, mu, kappa) - Von Mises (circular normal) distribution
pm.SkewNormal(name, mu=mu, sigma=sigma, alpha=alpha) - Skew-normal distribution
pm.Triangular(name, lower=lower, c=c, upper=upper) - Triangular distribution
pm.Gumbel(name, mu, beta) - Gumbel distribution for extreme values
pm.PolyaGamma(name, h, z) - Polya-gamma distribution for data augmentation patterns
pm.Rice(name, nu, sigma) - Rice (Rician) distribution
pm.Moyal(name, mu, sigma) - Moyal distribution
pm.Kumaraswamy(name, a, b) - Kumaraswamy distribution (Beta alternative)
pm.Wald(name, mu, lam) - Wald / inverse Gaussian distribution
pm.Interpolated(name, x_points, pdf_points) - Custom distribution from interpolation
Discrete Distributions
Discrete distributions define probabilities over integer-valued domains.
Common Discrete Distributions
pm.Bernoulli(name, p)
Bernoulli distribution (binary outcome)
Parameters:
p(success probability)Support: {0, 1}
Common uses: Binary classification, coin flips
pm.Binomial(name, n, p)
Binomial distribution
Parameters:
n(number of trials),p(success probability)Support: {0, 1, ..., n}
Common uses: Number of successes in fixed trials
pm.Poisson(name, mu)
Poisson distribution
Parameters:
mu(rate parameter)Support: {0, 1, 2, ...}
Common uses: Count data, rates, occurrences
pm.Categorical(name, p)
Categorical distribution
Parameters:
p(probability vector)Support: {0, 1, ..., K-1}
Common uses: Multi-class classification
pm.DiscreteUniform(name, lower, upper)
Discrete uniform distribution
Parameters:
lower,upper(bounds)Support: {lower, ..., upper}
Common uses: Uniform prior over finite integers
pm.NegativeBinomial(name, mu, alpha)
Negative binomial distribution
Parameters:
mu(mean),alpha(dispersion)Support: {0, 1, 2, ...}
Common uses: Overdispersed count data
pm.Geometric(name, p)
Geometric distribution
Parameters:
p(success probability)Support: {1, 2, 3, ...}
Common uses: Trial count through the first success (includes that success)
Specialized Discrete Distributions
pm.BetaBinomial(name, alpha, beta, n) - Beta-binomial (overdispersed binomial)
pm.HyperGeometric(name, N, k, n) - Hypergeometric distribution
pm.DiscreteWeibull(name, q, beta) - Discrete Weibull distribution
pm.OrderedLogistic(name, eta, cutpoints) - Ordered logistic for ordinal data
pm.OrderedProbit(name, eta, cutpoints) - Ordered probit for ordinal data
Multivariate Distributions
Multivariate distributions define joint probability distributions over vector-valued random variables.
Common Multivariate Distributions
pm.MvNormal(name, mu, cov)
Multivariate normal distribution
Parameters:
mu(mean vector),cov(covariance matrix)Common uses: Correlated continuous variables, Gaussian processes
pm.Dirichlet(name, a)
Dirichlet distribution
Parameters:
a(concentration parameters)Support: Simplex (sums to 1)
Common uses: Prior for probability vectors, topic modeling
pm.Multinomial(name, n, p)
Multinomial distribution
Parameters:
n(number of trials),p(probability vector)Common uses: Count data across multiple categories
pm.DirichletMultinomial(name, n, a)
Dirichlet-multinomial distribution
Common uses: Overdispersed categorical counts
pm.MvStudentT(name, nu=nu, mu=mu, scale=scale)
Multivariate Student's t-distribution
Parameters:
nu(degrees of freedom),mu(location),scale(scale matrix; covariance is nu/(nu-2) times this matrix for nu > 2)Common uses: Robust multivariate modeling
Specialized Multivariate Distributions
pm.LKJCorr(name, n, eta) - LKJ correlation matrix prior (for correlation matrices)
pm.LKJCholeskyCov(name, n=n, eta=eta, sd_dist=sd_dist) - LKJ prior with Cholesky decomposition
pm.OrderedMultinomial(name, eta, cutpoints, n) - Ordered multinomial outcomes
pm.StickBreakingWeights(name, alpha, K) - Stick-breaking weights for mixture models
pm.ZeroSumNormal(name, sigma) - Normal prior constrained to sum to zero
pm.Wishart(name, nu, V) - Wishart distribution (for covariance matrices; prefer LKJ-based priors for most covariance models)
There is no public pm.InverseWishart in PyMC 6.3.2. Prefer an explicit
scientifically justified covariance model, usually LKJ with marginal scales.
pm.WishartBartlett(name, S, nu) - Wishart with Bartlett decomposition
pm.MatrixNormal(name, mu=mu, rowcov=rowcov, colcov=colcov) - Matrix normal distribution
pm.KroneckerNormal(name, mu=mu, covs=covs, sigma=sigma) - Kronecker-structured normal
pm.CAR(name, mu, W, alpha, tau) - Conditional autoregressive (spatial)
pm.ICAR(name, W, sigma) - Intrinsic conditional autoregressive (spatial)
Mixture Distributions
Mixture distributions combine multiple component distributions.
pm.Mixture(name, w, comp_dists)
General mixture distribution
Parameters:
w(weights),comp_dists(component distributions)Common uses: Clustering, multi-modal data
pm.NormalMixture(name, w, mu, sigma)
Mixture of normal distributions
Common uses: Mixture of Gaussians clustering
Zero-Inflated and Hurdle Models
pm.ZeroInflatedPoisson(name, psi, mu) - Excess zeros in count data
pm.ZeroInflatedBinomial(name, psi, n, p) - Zero-inflated binomial
pm.ZeroInflatedNegativeBinomial(name, psi, mu, alpha) - Zero-inflated negative binomial
pm.HurdlePoisson(name, psi, mu) - Hurdle Poisson (two-part model)
pm.HurdleNegativeBinomial(name, psi, mu, alpha) - Hurdle negative binomial for overdispersed counts with structural zeros
pm.HurdleGamma(name, psi, alpha, beta) - Hurdle gamma
pm.HurdleLogNormal(name, psi, mu, sigma) - Hurdle log-normal
Time Series Distributions
Distributions designed for temporal data and sequential modeling.
pm.AR(name, rho=rho, sigma=sigma, init_dist=init_dist)
Autoregressive process
Parameters:
rho(AR coefficients),sigma(innovation std),init_dist(initial distribution)Common uses: Time series modeling, sequential data
pm.GaussianRandomWalk(name, mu=mu, sigma=sigma, init_dist=init_dist)
Gaussian random walk
Parameters:
mu(drift),sigma(step size),init_dist(initial value)Common uses: Cumulative processes, random walk priors
pm.MvGaussianRandomWalk(name, mu=mu, cov=cov, init_dist=init_dist)
Multivariate Gaussian random walk
pm.MvStudentTRandomWalk(name, nu=nu, mu=mu, scale=scale, init_dist=init_dist)
Heavy-tailed multivariate random walk
pm.GARCH11(name, omega=omega, alpha_1=alpha_1, beta_1=beta_1, initial_vol=initial_vol)
GARCH(1,1) volatility model
Common uses: Financial time series, volatility modeling
pm.EulerMaruyama(name, dt, sde_fn, sde_pars, init_dist=init_dist)
Stochastic differential equation via Euler-Maruyama discretization
Common uses: Continuous-time processes
Special Distributions
pm.Deterministic(name, var)
Deterministic transformation (not a random variable)
Use for computed quantities derived from other variables
pm.Potential(name, logp)
Add arbitrary log-probability contribution; ignored by prior/posterior forward sampling, so a Potential alone does not define a generative likelihood
Use for custom likelihood components or constraints
pm.Flat(name)
Improper flat prior (constant density); cannot draw prior predictive samples
Use sparingly; can cause sampling issues
pm.HalfFlat(name)
Improper flat prior on positive reals; cannot draw prior predictive samples
Use sparingly; can cause sampling issues
Distribution Modifiers
pm.Truncated(name, dist, lower, upper)
Truncate a supported univariate
.dist()distribution to specified bounds; support and inverse-CDF/rejection-sampling limitations depend on the base distribution
pm.Censored(name, dist, lower, upper)
Handle censored observations (observed bounds, not exact values)
pm.CustomDist(name, ..., logp, random)
Define custom distributions with user-specified log-probability and random sampling functions
pm.Simulator(name, fn, params, ...)
Custom distributions via simulation (for likelihood-free inference)
Usage Tips
Choosing Priors
Scale parameters (σ, τ): Use
HalfNormal,HalfCauchy,Exponential, orGammaProbabilities: Use
BetaorUniform(0, 1)Unbounded parameters: Use
NormalorStudentT(for robustness)Positive parameters: Use
LogNormal,Gamma, orExponentialCorrelation/covariance matrices: Prefer
LKJCholeskyCovfor covariance models; useLKJCorrwhen only correlations are neededCount data: Use
PoissonorNegativeBinomial(for overdispersion)
Shape Broadcasting
PyMC distributions support NumPy-style broadcasting. Use the shape parameter to create vectors or arrays of random variables:
# Vector of 5 independent normals
beta = pm.Normal('beta', mu=0, sigma=1, shape=5)
# 3x4 matrix of independent gammas
tau = pm.Gamma('tau', alpha=2, beta=1, shape=(3, 4))Using dims for Named Dimensions
Instead of shape, use dims for more readable models:
with pm.Model(coords={'predictors': ['age', 'income', 'education']}) as model:
beta = pm.Normal('beta', mu=0, sigma=1, dims='predictors')Parameterization and scientific caveats
Entries list important parameters, not exhaustive positional signatures. Prefer keywords: several distributions have keyword-only parameters. Catalog names and constructor signatures were checked against released source; specialized distributions were not all fit or sampled in this review.
NegativeBinomial has variance
mu + mu**2 / alpha. InverseGammabetais a scale, while Gammabetais a rate. PolyaGamma needs the optionalpolyagammapackage for relevant numerical operations.In zero-inflated models
psiis the weight on the ordinary count component, not the probability of a structural zero. In hurdle models it is the weight on the positive component. HurdleGamma/HurdleLogNormal are intended as observed likelihoods or forward-sampled RVs; ordinary MCMC does not correctly sample their mixed point-mass/continuous latent support.LKJCholeskyCov(..., compute_corr=True)returns(chol, corr, stds)by default.LKJCorrordinarily returns packed upper-triangle correlations, not a full correlation matrix.eta=1is uniform over correlation matrices, not uniform independent marginal correlations for arbitrary dimension.pm.Censoredis notpm.Truncated: censoring puts probability mass at recorded limits; truncation conditions on being included inside limits. Selection and measurement processes decide the correct likelihood.A density definition without a
random/generative implementation can support fitting but not meaningful forward simulation. CheckCustomDistevent/batch shapes, log-density normalization and gradient behavior independently.Ordinary
dimsnames annotate arrays; they do not align symbolic arithmetic. Multivariate event dimensions and batch dimensions have different meanings.
Sources: distribution catalog, released distribution source, forward sampling source.
Requirements and compatibility
Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta
“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.
Needs: Declares allowed tools, Needs network access, Needs Python
The author says: Requires Python 3.12+ with PyMC 6.3.2, PyTensor 3.3.2 and ArviZ 1.3-compatible dependencies; NumPy, pandas, Matplotlib, h5netcdf and h5py for bundled helpers/artifacts. Network access for installation only. Optional nutpie, NumPyro and BlackJAX samplers need separate dependencies.
Security
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Attribution and licence
- Created by
- K-Dense Inc.
- Publisher
- K-Dense (Community)
- Source
- K-Dense-AI/scientific-agent-skills · skills/pymc · commit a25cf9e
- Licence
- MIT License (redistribution allowed)
- LICENSE (added by AutoGineer from LICENSE.md)
- ATTRIBUTION.md (written by AutoGineer)
- Synced
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