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Train Sentence Transformers

Hugging FaceOfficialPublished by Hugging Face

  • Skill
  • Workflow
  • Data and AI
  • Apache-2.0
  • Medium risk
  • Has scripts

From the author

Train or fine-tune sentence-transformers models across `SentenceTransformer` (bi-encoder, dense or static embedding model for retrieval, similarity, clustering, classification, paraphrase mining, dedup, multimodal), `CrossEncoder` (reranker, pair scoring for two-stage retrieval / pair classification), `SparseEncoder` (SPLADE, sparse embedding model for learned-sparse retrieval), and `MultiVectorEncoder` (ColBERT / late-interaction, per-token embeddings scored with MaxSim). Covers loss selection, hard-negative mining, evaluators, distillation, LoRA, Matryoshka, and Hugging Face Hub publishing. Use for any sentence-transformers training task.
— the description by Hugging Face

AutoGineer summary

Written by AutoGineer from the skill’s own files, not by the author

This skill provides a standardized approach to training various embedding and ranking models using the sentence-transformers framework. It acts as a routing system that directs users to specific production templates and technical references based on the chosen model architecture. The workflow covers the entire lifecycle from model selection and data preparation to loss function configuration, evaluation, and publishing to the Hugging Face Hub.

What it does

  • Routes users to appropriate training templates for bi-encoders, cross-encoders, sparse encoders, and multi-vector encoders.
  • Provides technical references for loss functions, evaluators, and model architectures.
  • Offers guidance on hard-negative mining and dataset formatting for training.
  • Includes instructions for hardware-specific configurations and Hugging Face Hub integration.
  • Defines mandatory script requirements such as smoke testing, logging, and verdict reporting.

When to use it

  • When you need to train or fine-tune a sentence-transformers model for retrieval, similarity, or ranking tasks.
  • When you are unsure which model architecture (e.g., bi-encoder vs. cross-encoder) is best suited for your specific use case.
  • When you require a structured, repeatable process for training and evaluating embedding models.
  • When you need to integrate advanced training techniques like distillation, LoRA, or Matryoshka embeddings.

Advantages

  • Enforces consistent training practices through standardized production templates.
  • Reduces common errors by providing specific references for loss-to-data-shape mapping.
  • Facilitates systematic experimentation with built-in logging and verdict reporting.
  • Supports a wide range of model types including modern late-interaction and sparse architectures.

Usage examples

“I need to train a bi-encoder for semantic search on my internal documentation.”
The agent will identify the [SentenceTransformer] type, provide the relevant loss and evaluator references, and guide you to the bi-encoder production template.
“How do I implement a two-stage retrieval system using a reranker?”
The agent will direct you to the [CrossEncoder] documentation and template, explaining how to use it to score pairs for two-stage retrieval.
“I want to train a SPLADE model for sparse retrieval.”
The agent will provide the [SparseEncoder] references, including the required SpladeLoss wrapper and specific evaluators for sparse retrieval.
“How can I improve my retrieval model using hard negatives?”
The agent will guide you to the hard-negative mining script and explain how to generate n-tuple datasets for training.

Install

  1. Download the skill as a ZIP:

    https://autogineer.com/agent-skills/huggingface/train-sentence-transformers/download
  2. Unzip it into the cross-client skills folder of your project:

    mkdir -p .agents/skills && unzip train-sentence-transformers.zip -d .agents/skills

Documentation by Hugging Face

Train a sentence-transformers Model

This SKILL.md is a router, not a manual. It tells you which references and example scripts to load for your task. The actual content (recommended losses, evaluators, training-script structure, model selection, training-arg knobs, troubleshooting) lives in references/ and scripts/.

Do not synthesize a training script from this file alone. Open the per-type production template (scripts/train_<type>_example.py) and copy it as your starting point. The templates contain load-bearing scaffolding (autocast helper, model-card class, logger silencing list, force=True, seed, TF32, version-compatible imports, named-evaluator metric handling) that prior agent runs have repeatedly missed when rolling their own from a synthesized snippet.

1. Identify the model type

TagClassWhat it doesWhen to pick
[SentenceTransformer]SentenceTransformer (bi-encoder)Maps each input to a fixed-dim dense vectorRetrieval, similarity, clustering, classification, paraphrase mining, dedup
[CrossEncoder]CrossEncoder (reranker)Scores (query, passage) pairs jointlyTwo-stage retrieval (rerank top-100 from bi-encoder), pair classification
[SparseEncoder]SparseEncoder (SPLADE)Sparse vectors over the vocabularyLearned-sparse retrieval, inverted-index backends (Elasticsearch / OpenSearch / Lucene)
[MultiVectorEncoder]MultiVectorEncoder (ColBERT)One embedding per token, scored with MaxSimLate-interaction retrieval, recall gains over bi-encoders at higher storage cost, multimodal (ColPali / ColQwen2)

Tiebreakers when the request is ambiguous: "embedding model" / "vector search" / "similarity" → [SentenceTransformer]. "rerank" / "ranker" / "two-stage" → [CrossEncoder]. "SPLADE" / "sparse" / "inverted index" → [SparseEncoder]. "ColBERT" / "late interaction" / "multi-vector" / "MaxSim" / "ColPali" / "ColQwen" → [MultiVectorEncoder]. If still unclear, ask.

2. Required reading

Read these in full before writing any code. Do not triage by perceived relevance.

Per-type: always required

[SentenceTransformer]

  • references/losses_sentence_transformer.md: loss-to-data-shape mapping, BatchSamplers.NO_DUPLICATES requirement for MNRL-family, Cached* ↔ gradient_checkpointing incompatibility.

  • references/evaluators_sentence_transformer.md: evaluator-to-task mapping, metric_for_best_model key construction (named vs unnamed), per-evaluator primary_metric values.

  • references/model_architectures.md: encoder vs decoder vs static vs Router pipelines, pooling rules (mean / cls / lasttoken), auto-mean-pooling behavior for fresh-start MLM bases.

  • scripts/train_sentence_transformer_example.py: production template. Copy this as your starting point.

[CrossEncoder]

  • references/losses_cross_encoder.md: pointwise / pairwise / listwise / distillation, pos_weight derivation, activation_fn=Identity() mandatory for non-BCE losses (silent eval-rank collapse otherwise).

  • references/evaluators_cross_encoder.md: CrossEncoderRerankingEvaluator recipe, named-evaluator key format eval_{name}_{primary_metric}.

  • scripts/train_cross_encoder_example.py: production template. Copy this as your starting point.

[SparseEncoder]

  • references/losses_sparse_encoder.md: SpladeLoss wrapper requirement, FLOPS regularizer weights, smoke-test active-dim ramp behavior.

  • references/evaluators_sparse_encoder.md: SparseNanoBEIREvaluator (English-only) and the in-domain alternative, eval_{name}_{primary_metric} key format.

  • scripts/train_sparse_encoder_example.py: production template. Copy this as your starting point.

[MultiVectorEncoder]

  • references/losses_multi_vector_encoder.md: MaxSim scoring, scale choice per scoring mode (scale=1.0 for MaxSim, roughly the average query length for MeanMaxSim), MNRL / CachedMNRL / MarginMSE / DistillKLDiv, XTR-vs-ColBERT scoring, CachedMNRL ↔ gradient_checkpointing incompatibility.

  • references/evaluators_multi_vector_encoder.md: MultiVectorNanoBEIREvaluator (English-only) and the in-domain alternative, eval_NanoBEIR_mean_maxsim_ndcg@10 key format, distillation-eval spearman variant.

  • scripts/train_multi_vector_encoder_example.py: production template. Copy this as your starting point.

Cross-cutting: always required (regardless of task)
  • references/training_args.md: TrainingArguments knobs, precision rules (load fp32 + autocast bf16/fp16, never torch_dtype=bfloat16), warmup_steps (float) vs deprecated warmup_ratio, save_steps must be a multiple of eval_steps for load_best_model_at_end, schedulers, HPO, tracker, resume, hub-push variants.

  • references/dataset_formats.md: column-matching rules (label name auto-detection, column-order-not-name), reshaping recipes, hard-negative mining options.

  • references/base_model_selection.md: discovery commands, per-type model namespaces, ModernBERT-family max_seq_length=8192 trap, datasets >= 4 script-loader rejection, non-English starting-point shortcuts.

  • references/troubleshooting.md: symptom-indexed failure recipes. Skim the section headings on every run, even a healthy one. The "Metrics don't improve" and "Hub push fails" entries cover bugs that bite frequently and are cheaper to recognize before they fire than to debug after.

Cross-cutting: load when applicable
  • references/hardware_guide.md: VRAM sizing, multi-GPU, FSDP / DeepSpeed, HF Jobs flavors. Required for >24GB models, multi-GPU, or HF Jobs runs.

  • references/hf_jobs_execution.md: required when running on HF Jobs.

  • references/prompts_and_instructions.md: required when using prompt-tuned bases (E5, BGE, GTE, Qwen3-Embedding, Instructor, Nomic, etc.) or adding query: / passage: style prefixes.

Variant scripts (open when the task matches)
  • [SentenceTransformer] scripts/train_sentence_transformer_<matryoshka|multi_dataset|with_lora|distillation|make_multilingual|static_embedding>_example.py.

  • [CrossEncoder] scripts/train_cross_encoder_<distillation|listwise>_example.py.

  • [SparseEncoder] scripts/train_sparse_encoder_distillation_example.py.

  • Hard-negative mining CLI: scripts/mine_hard_negatives.py.

3. Defaults

Override only if the user specifies otherwise:

  • Local execution. Pitch HF Jobs only if local hardware can't fit the job.

  • Single run. After it completes, propose experimentation if the user would benefit (weak/marginal verdict, "see how high you can push it" framing, etc.). Iteration rules in references/training_args.md (Experimentation section).

  • Public Hub push at end-of-run, wrapped in try-except. On HF Jobs (ephemeral env) ALSO enable in-trainer push (push_to_hub=True + hub_strategy="every_save"). Details in references/hf_jobs_execution.md.

4. Constraints the produced script must satisfy

These are non-negotiable contracts. Implementation lives in the production templates and references. Do not reinvent.

  • Capture the pre-training evaluator score as baseline_eval before trainer.train().

  • Emit a single end-of-run line: VERDICT: WIN|MARGINAL|REGRESSION | score=... | baseline=... | delta=.... A monitor scrapes for this.

  • Silence httpx, httpcore, huggingface_hub, urllib3, filelock, fsspec to WARNING (otherwise HF download URLs flood the agent's context).

  • Tee logs to logs/{RUN_NAME}.log.

  • End with model.push_to_hub(...) wrapped in try/except.

  • Smoke-test before any long run (max_steps=1 + tiny dataset slice). The production templates show one common pattern (SMOKE_TEST env var).

  • [CrossEncoder] Include EarlyStoppingCallback(patience>=3). CE rerankers often peak mid-training and regress.

  • [SparseEncoder] Log query_active_dims / corpus_active_dims on the verdict line. High nDCG with collapsed sparsity is not a win. The keys come back name-prefixed (e.g. ..._query_active_dims). Use suffix matching to pluck them. See the SPARSE production template for the exact pattern.

  • [MultiVectorEncoder] Match scale to the scoring mode on any MNRL-family loss: near 1.0 for unnormalized MaxSim (do not copy scale=20.0 from bi-encoder MNRL), roughly the average query length with length-normalized MeanMaxSim, since each score is divided by its query's token count. XTRScores is a train-only similarity_fct: the evaluators reject it, so evaluation always scores with MaxSim, including for XTR-trained models.

5. Workflow

  1. Identify the model type (§1). Ask if ambiguous.

  2. Load the §2 required-reading files for that type.

  3. Open scripts/train_<type>_example.py and copy it as your starting point.

  4. Replace MODEL_NAME, DATASET_NAME, RUN_NAME, the loss, and the evaluator with the user's task. Cross-check loss/data-shape match against references/losses_<type>.md. Cross-check the metric_for_best_model key against references/evaluators_<type>.md (named evaluators format the key as eval_{name}_{primary_metric}).

  5. Smoke-test (max_steps=1).

  6. Run.

  7. After the run, append to logs/experiments.md and propose iteration if the verdict is weak/marginal.

Prerequisites

pip install "sentence-transformers[train]>=5.0"        # add [train,image] / [audio] / [video] for [SentenceTransformer] multimodal
                                                       # [MultiVectorEncoder] requires >=6.0
pip install trackio                                    # optional tracker (or wandb / tensorboard / mlflow)
hf auth login                                          # or set HF_TOKEN with write scope (for Hub push)

GPU strongly recommended. CPU works only for demos and [SentenceTransformer] StaticEmbedding.

Files

scripts/train_sentence_transformer_with_lora_example.py

#!/usr/bin/env python3
# /// script
# requires-python = ">=3.10"
# dependencies = [
#     "sentence-transformers[train]>=5.0",
#     "peft>=0.7.0",
#     "datasets>=2.19.0",
#     "accelerate>=0.26.0",
#     "trackio",
# ]
# ///
"""LoRA / PEFT adapter training: memory-efficient fine-tuning.

Instead of training all parameters, LoRA injects small low-rank adapter
matrices and trains only those (~50-100x fewer trainable params). Works out
of the box with sentence-transformers via `peft`.

Use LoRA when: the base is a large decoder (Qwen3, Llama, Mistral, Gemma) and
a full fine-tune is VRAM-prohibitive. You want multiple task-specific adapters
on one base. You're nudging an existing strong retriever (E5-mistral,
Qwen3-Embedding) on domain data. Skip LoRA for small encoders (BERT-base,
MiniLM: full fine-tune is tractable and usually better) or tiny datasets
(<1k pairs: adapter rank becomes the bottleneck).

This template defaults to BERT-base for portability. Swap `MODEL_NAME` to a
decoder backbone for the use case LoRA actually shines on.

Architecture variants:
- Bi-encoder (this script): `TaskType.FEATURE_EXTRACTION`.
- Sparse-encoder: same pattern. `SparseEncoder` supports `add_adapter`. See
  `examples/sparse_encoder/training/peft/train_splade_gooaq_peft.py`.
- Cross-encoder: use `TaskType.SEQ_CLS` for `num_labels >= 1`. Community
  examples are sparse. Smoke-test with `max_steps=1` first.

Key hyperparameters:
- `r` (rank): 8-128. Bigger = more capacity + memory. 64 is a strong default.
- `lora_alpha`: typically 2 x r (some teams use 1 x r for stability).
- `lora_dropout`: 0.05-0.1. Raise to 0.1 for small datasets.
- `target_modules=None` auto-picks attention modules. Pass
  `["q_proj", "k_proj", "v_proj", "o_proj"]` (attention) or
  `["gate_proj", "up_proj", "down_proj"]` (MLP) for explicit control.
- `modules_to_save=["pooler"]` for CLS-pooled bases. The pooler Dense should
  be trained too, not adapted.
- LR is HIGHER than full fine-tune: 1e-4 to 5e-4 for LoRA vs. 2e-5 full.

Rough memory savings on a 0.6B base (bf16, batch 64, seq 128): full fine-tune
~24 GB, LoRA r=64 ~10 GB (~12M trainable, 2%), LoRA r=16 ~8 GB (~3M, 0.5%).
Bigger savings on 7B+ models.

Saving / sharing: `model.save_pretrained("dir")` writes ONLY the adapter (few
MB) plus a reference to the base model. Loaders call the same one-liner.
`peft` is invoked and the base downloaded on demand. For a merged model that
loads without `peft` (needed for vLLM-style servers), call
`model.transformers_model.merge_and_unload()` then `save_pretrained` /
`push_to_hub`.

Swapping adapters at inference (the main multi-task deployment win):
    model = SentenceTransformer("base-model")
    model.load_adapter("adapter-a", adapter_name="a")
    model.load_adapter("adapter-b", adapter_name="b")
    model.set_adapter("a"); emb_a = model.encode([...])

QLoRA (4-bit base + LoRA) for 7B+ on consumer GPUs:
    from transformers import BitsAndBytesConfig
    bnb = BitsAndBytesConfig(load_in_4bit=True, bnb_4bit_quant_type="nf4",
                             bnb_4bit_compute_dtype=torch.bfloat16)
    model = SentenceTransformer("Qwen/Qwen3-Embedding-7B",
                                 model_kwargs={"quantization_config": bnb})
    model.add_adapter(LoraConfig(r=64, lora_alpha=128, ...))
`pip install bitsandbytes` first. Linux-only for bitsandbytes (Windows: the
fork or WSL).

Known issues:
- LoRA PEFT on Qwen2.5-VL / paligemma / gemma3 / internvl / aya_vision under
  transformers v5: `AutoModel.from_pretrained(peft_path)` crashes with
  `KeyError: 'qwen2_vl'`. Pin transformers to 4.x or wait for the upstream fix.
- `gradient_checkpointing=True` + LoRA: usually works. If you hit "None of
  the inputs have requires_grad=True", call
  `model.transformers_model.enable_input_require_grads()` after `add_adapter`.
- `add_adapter` before pooling: when building from scratch (not loading a
  pre-assembled checkpoint), call `add_adapter` AFTER
  `SentenceTransformer(modules=[...])` is complete.

Common gotchas: LR still at 2e-5 (LoRA needs higher). Forgetting to merge for
vLLM-style servers (they don't load `peft`). `r=8` too small for retrievers
trained on millions of pairs (try 32 or 64). `modules_to_save` missing the
pooler on CLS-pooled bases.
"""

from __future__ import annotations

import argparse
import logging
import os
from contextlib import nullcontext

import torch
from datasets import load_dataset
from peft import LoraConfig, TaskType

from sentence_transformers import (
    SentenceTransformer,
    SentenceTransformerModelCardData,
    SentenceTransformerTrainer,
    SentenceTransformerTrainingArguments,
)
from sentence_transformers.base.sampler import BatchSamplers
from sentence_transformers.sentence_transformer.evaluation import NanoBEIREvaluator
from sentence_transformers.sentence_transformer.losses import CachedMultipleNegativesRankingLoss


def autocast_ctx():
    """bf16/fp16 autocast for evaluator calls outside the trainer (which has its own autocast)."""
    if not torch.cuda.is_available():
        return nullcontext()
    dtype = torch.bfloat16 if torch.cuda.is_bf16_supported() else torch.float16
    return torch.autocast("cuda", dtype=dtype)


def log_trackio_dashboard():
    """Surface the Trackio dashboard URL so the user can watch training live."""
    try:
        from huggingface_hub import whoami

        hf_user = whoami().get("name")
        if hf_user:
            logging.info(
                f"Trackio dashboard (live training progress): https://huggingface.co/spaces/{hf_user}/trackio"
            )
    except Exception:
        pass


MODEL_NAME = "google-bert/bert-base-uncased"
OUTPUT_DIR = "models/bert-base-gooaq-lora"
RUN_NAME = "bert-base-gooaq-lora"
SMOKE_TEST = os.environ.get("SMOKE_TEST") == "1"


def setup_logging():
    """Configure logging + TF32. Tees to logs/{RUN_NAME}.log and silences HTTP spam."""
    os.makedirs("logs", exist_ok=True)
    logging.basicConfig(
        format="%(asctime)s - %(message)s",
        datefmt="%Y-%m-%d %H:%M:%S",
        level=logging.INFO,
        handlers=[logging.StreamHandler(), logging.FileHandler(f"logs/{RUN_NAME}.log")],
        force=True,
    )
    for noisy in ("httpx", "httpcore", "huggingface_hub", "urllib3", "filelock", "fsspec"):
        logging.getLogger(noisy).setLevel(logging.WARNING)
    if torch.cuda.is_available():
        torch.set_float32_matmul_precision("high")  # TF32 on Ampere+, no quality loss


def main() -> None:
    parser = argparse.ArgumentParser()
    parser.add_argument(
        "--eval-only", type=str, default=None, help="Skip training; load this saved model and run only the evaluator."
    )
    cli, _ = parser.parse_known_args()

    setup_logging()

    if cli.eval_only:
        logging.info(f"Eval-only mode: loading model from {cli.eval_only}")
        model = SentenceTransformer(cli.eval_only)
        evaluator = NanoBEIREvaluator()
        with autocast_ctx():
            evaluator(model)
        return

    model = SentenceTransformer(
        MODEL_NAME,
        model_card_data=SentenceTransformerModelCardData(
            language="en",
            license="apache-2.0",
            model_name=f"{MODEL_NAME.split('/')[-1]} LoRA adapter on GooAQ",
        ),
    )

    peft_config = LoraConfig(
        task_type=TaskType.FEATURE_EXTRACTION,
        inference_mode=False,
        r=64,
        lora_alpha=128,
        lora_dropout=0.1,
    )
    model.add_adapter(peft_config)
    trainable = sum(p.numel() for p in model.parameters() if p.requires_grad)
    total = sum(p.numel() for p in model.parameters())
    logging.info(f"trainable params: {trainable:,} / {total:,} ({100 * trainable / total:.2f}%)")

    full = load_dataset("sentence-transformers/gooaq", split="train")
    if SMOKE_TEST:
        logging.info("SMOKE_TEST=1: trimmed dataset; will run max_steps=1 and skip Hub push")
        full = full.select(range(min(200, len(full))))
    eval_size = 20 if SMOKE_TEST else 10_000
    train_cap = 50 if SMOKE_TEST else 500_000
    split = full.train_test_split(test_size=eval_size, seed=12)
    train_dataset = split["train"].select(range(min(train_cap, len(split["train"]))))
    eval_dataset = split["test"]
    logging.info(f"train={len(train_dataset):,} eval={len(eval_dataset):,}")

    loss = CachedMultipleNegativesRankingLoss(model, mini_batch_size=32)

    evaluator = NanoBEIREvaluator()
    logging.info("Baseline:")
    with autocast_ctx():
        # Must run before deriving metric_key: evaluator(model) mutates primary_metric to add the name_ prefix.
        baseline_eval = evaluator(model)[evaluator.primary_metric]
    metric_key = f"eval_{evaluator.primary_metric}"

    args = SentenceTransformerTrainingArguments(
        output_dir=OUTPUT_DIR,
        num_train_epochs=1,
        max_steps=1 if SMOKE_TEST else -1,
        per_device_train_batch_size=512,
        per_device_eval_batch_size=512,
        learning_rate=1e-4,
        weight_decay=0.01,
        warmup_steps=0.1,
        bf16=True,
        batch_sampler=BatchSamplers.NO_DUPLICATES,
        eval_strategy="steps",
        eval_steps=0.1,
        save_strategy="steps",
        save_steps=0.1,
        save_total_limit=2,
        logging_steps=0.01,
        logging_first_step=True,
        load_best_model_at_end=True,
        metric_for_best_model=metric_key,
        greater_is_better=True,
        report_to="none" if SMOKE_TEST else "trackio",
        run_name=RUN_NAME,
        seed=12,
    )

    trainer = SentenceTransformerTrainer(
        model=model,
        args=args,
        train_dataset=train_dataset,
        eval_dataset=eval_dataset,
        loss=loss,
        evaluator=evaluator,
    )
    if not SMOKE_TEST:
        log_trackio_dashboard()
    trainer.train()

    logging.info("Post-training evaluation:")
    with autocast_ctx():
        score = evaluator(model)[evaluator.primary_metric]
    delta = score - baseline_eval
    verdict = "WIN" if delta >= 0.005 else "MARGINAL" if delta >= 0 else "REGRESSION"
    logging.info(f"VERDICT: {verdict} | score={score:.4f} | baseline={baseline_eval:.4f} | delta={delta:+.4f}")

    model.save_pretrained(f"{OUTPUT_DIR}/final")

    if SMOKE_TEST:
        logging.info("SMOKE_TEST=1: skipping Hub push")
        return

    try:
        commit_url = model.push_to_hub(RUN_NAME)
        logging.info(f"Pushed model to {commit_url.rsplit('/commit/', 1)[0]}")
    except Exception:
        import traceback

        logging.error(f"Hub push failed:\n{traceback.format_exc()}")


if __name__ == "__main__":
    main()

Requirements and compatibility

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Needs: Needs Python

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Attribution and licence

Published by
Hugging Face
Publisher
Hugging Face (Official)
Source
huggingface/skills · skills/train-sentence-transformers · commit 25910b3
Licence
Apache License 2.0 (redistribution allowed)
  • LICENSE (added by AutoGineer from LICENSE)
  • ATTRIBUTION.md (written by AutoGineer)
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