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Agent Skills

Trusted skills for AI agents from official vendors and established maintainers. Every skill is attributed to its author, scanned, and comes with install steps for your AI tool.

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184 skills

  • Msa Search Nim

    NVIDIAOfficial

    Generate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search NIM. Use for homolog search, UniRef30/ColabFold env searches, A3M or FASTA alignments, paired MSA search for complexes, PDB70 structural templates, hosted NVIDIA API calls, or local Docker deployment. For local deployment, download the databases in parallel with aria2c and launch via NIM_MODEL_NAME (the recommended default fast path, ~14 min vs over 80 min for the built-in downloader); a plain docker run uses the slow built-in downloader.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyMedium riskHas scriptsGitHub stars of the source repository3.9k

  • Boltz2 Nim

    NVIDIAOfficial

    Use Boltz2 NIM for biomolecular structure prediction and binding affinity. Invoke for Boltz2, protein structures, protein-ligand/DNA/RNA complexes, SMILES or CCD ligands, pIC50/IC50 affinity scoring, mmCIF output, hosted NVIDIA API calls, or local Docker deployment.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyMedium riskGitHub stars of the source repository3.9k

  • Kermt Infer

    NVIDIAOfficial

    Orchestrates inference workflows for finetuned KERMT molecular models using SMILES data.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Medium riskHas scriptsGitHub stars of the source repository3.9k

  • Rfd4 Proteina Nim

    NVIDIAOfficial

    Interface with RFD4-Proteina NIM for protein structure and sequence design via NVIDIA hosted APIs or local deployments.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Medium riskHas scriptsGitHub stars of the source repository3.9k

  • Dicom Series To Volume

    NVIDIAOfficial

    A utility for converting single-series CT DICOM folders into Hounsfield Unit NIfTI volumes with affine metadata.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Medium riskHas scriptsGitHub stars of the source repository3.9k

  • Proteinmpnn Nim

    NVIDIAOfficial

    Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Sends user-provided PDB files and design parameters to NVIDIA's hosted API, authenticated with an environment API key, or to a user-selected local NIM. Use for sequence design, backbone redesign, fixed chains and residues, omit_AAs, sampling temperature, soluble model, local Docker, and multi-FASTA output.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyMedium riskHas scriptsGitHub stars of the source repository3.9k

  • Openfold3 Nim

    NVIDIAOfficial

    Use this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure prediction. Invoke whenever the user mentions OpenFold3 or needs protein, protein-ligand, protein-DNA/RNA, or multi-chain complex prediction with the hosted NVIDIA API or local Docker NIM. Covers endpoint choice, auth, request payloads, output artifacts, confidence scores, and local container setup.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyMedium riskGitHub stars of the source repository3.9k

  • Clinvar Database

    Google DeepMindOfficial

    Query the ClinVar database for clinical significance, pathogenicity classifications, and evidence for human genomic variants.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Human Protein Atlas Database

    Google DeepMindOfficial

    Retrieve protein expression and spatial localization data from the Human Protein Atlas.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Ensembl Database

    Google DeepMindOfficial

    A tool for querying the Ensembl database to retrieve genomic data, map identifiers, and predict variant consequences.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Ucsc Conservation And Tfbs

    Google DeepMindOfficial

    Query evolutionary conservation scores and transcription factor binding sites from the UCSC Genome Browser.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Chembl Database

    Google DeepMindOfficial

    Query the ChEMBL database for bioactive molecules, targets, and drug data using a standardized API interface.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Encode Ccres Database

    Google DeepMindOfficial

    Query the ENCODE Registry of cis-Regulatory Elements and experimental data via SCREEN GraphQL and REST APIs.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Gtex Database

    Google DeepMindOfficial

    Access quantitative RNA expression and eQTL data from the GTEx Project across 54 human tissue sites.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Unibind Database

    Google DeepMindOfficial

    Query and download experimentally validated transcription factor binding site data from the UniBind database.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Protein Sequence Similarity Search

    Google DeepMindOfficial

    Perform rapid or comprehensive protein sequence homology searches using MMseqs2 or EBI BLAST.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Dbsnp Database

    Google DeepMindOfficial

    Query and map genetic variants using NCBI's dbSNP database.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Jaspar Database

    Google DeepMindOfficial

    Query the JASPAR database for transcription factor binding profiles and motifs.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Pdb Database

    Google DeepMindOfficial

    Search, query, and download biomolecular 3D structures and metadata from the RCSB Protein Data Bank.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Alphagenome Single Variant Analysis

    Google DeepMindOfficial

    Analyze the functional impact of genetic variants on gene expression and regulatory elements using the AlphaGenome API.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Ncbi Sequence Fetch

    Google DeepMindOfficial

    Retrieve protein and nucleotide sequences from NCBI databases using E-utilities.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Foldseek Structural Search

    Google DeepMindOfficial

    Performs 3D structural protein searches against major databases using the Foldseek API.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Protein Sequence Msa

    Google DeepMindOfficial

    Performs multiple sequence alignment of protein sequences using the EBI Clustal Omega API.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k

  • Gnomad Database

    Google DeepMindOfficial

    Query the Genome Aggregation Database (gnomAD) for variant frequencies, gene constraint metrics, and genomic region searches.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository3.4k