Polars Bio
K-Dense· Community
Perform genomic interval arithmetic and bioinformatics file I/O using Polars DataFrames.
Science and researchClaude CodeClaude appsOpenAI Codex+14 more
Apache-2.0Low riskGitHub stars of the source repository56.4k
Agent Skills
Trusted skills for AI agents from official vendors and established maintainers. Every skill is attributed to its author, scanned, and comes with install steps for your AI tool.
Results
184 skills
Imaging Data Commons
K-Dense· Community
Query, filter, and download public cancer imaging datasets from the NCI Imaging Data Commons.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Pkpd Modeling
K-Dense· Community
A comprehensive toolkit for pharmacokinetic and pharmacodynamic modeling, simulation, and data analysis.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Biopython
K-Dense· Community
A comprehensive Python library for computational molecular biology, sequence analysis, and bioinformatics workflows.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskGitHub stars of the source repository56.4k
Qiime2 Amplicon
K-Dense· Community
Automated QIIME 2 workflow for processing paired-end 16S amplicon sequencing data with provenance tracking.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Waypoint Bio
K-Dense· Community
A toolkit for working with Outpost Bio's Waypoint microbiome foundation models and the Compass benchmark.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Pathogen Variant Surveillance
K-Dense· Community
Query and analyze public pathogen genomic surveillance data from GenSpectrum and Pathoplexus LAPIS deployments.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Pydeseq2
K-Dense· Community
Perform bulk RNA-seq differential expression analysis using PyDESeq2 with support for GLMs, Wald tests, and LFC shrinkage.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Nextflow
K-Dense· Community
Build, run, and debug reproducible data pipelines using Nextflow DSL2 and nf-core workflows.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreApache-2.0Low riskGitHub stars of the source repository56.4k
Benchling Integration
K-Dense· Community
Integrate with Benchling using the Python SDK and REST API to automate lab data, registry entities, inventory, and ELN workflows.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskGitHub stars of the source repository56.4k
Mageck
K-Dense· Community
A workflow for analyzing pooled CRISPR screens using MAGeCK to identify gene hits and perform quality control.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Phylogenetics
K-Dense· Community
Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and FastTree approximate inference. Uses ETE3 for tree summaries and visualization. Applies to homologous nucleotide or protein sequences, microbial gene trees, protein families, and cautiously interpreted dated phylogenies.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreLink-onlyLow riskHas scriptsGitHub stars of the source repository56.4k
Pytdc
K-Dense· Community
Provides workflows for accessing and evaluating therapeutic machine learning datasets and benchmarks via PyTDC.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Gtars
K-Dense· Community
Provides Rust, Python, and CLI interfaces for genomic interval processing, set algebra, and signal track generation.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Lamindb
K-Dense· Community
Manage biological datasets, metadata, and lineage using LaminDB for reproducible research.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskGitHub stars of the source repository56.4k
Ncats Arax
K-Dense· Community
Query the NCATS ARAX biomedical knowledge graph API for bounded, provenance-rich relationship lookups.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Glycoengineering
K-Dense· Community
Analyzes and engineers protein glycosylation by scanning canonical N-glycosylation sequons, describing S/T-rich regions, checking curated glycan evidence, and preparing NetNGlyc, NetOGlyc and GlycoSHIELD workflows. Use for glycoprotein engineering, antibody Fc glycosylation, glycan shielding, and site-specific glycoproteomics interpretation.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreLink-onlyLow riskHas scriptsGitHub stars of the source repository56.4k
Cellprofiler
K-Dense· Community
Automates reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counting, and fluorescence measurement.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Flowkit
K-Dense· Community
Analyze flow cytometry data and reproduce FlowJo workspaces using the FlowKit Python library.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Primer Design
K-Dense· Community
A comprehensive workflow for designing, auditing, and validating PCR and RT-qPCR primer pairs using local tools.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Dnanexus Integration
K-Dense· Community
Build, manage, and execute reproducible genomics workloads on the DNAnexus platform using the dx CLI, SDK, and workflow tools.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreMITLow riskHas scriptsGitHub stars of the source repository56.4k
Single Cell Rna Qc
AnthropicOfficial
Automated quality control workflow for single-cell RNA-seq data using scverse best practices.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreApache-2.0Low riskHas scriptsGitHub stars of the source repository35.1k
Nextflow Development
AnthropicOfficial
Automate the execution of nf-core bioinformatics pipelines for RNA-seq, WGS/WES, and ATAC-seq analysis.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreApache-2.0Medium riskHas scriptsGitHub stars of the source repository35.1k
Start
AnthropicOfficial
An onboarding workflow to initialize the bio-research environment and audit available tools and analysis capabilities.
Science and researchClaude CodeClaude appsOpenAI Codex+14 moreApache-2.0GitHub stars of the source repository35.1k