Parabricks
NVIDIAOfficialCreated by Angel PizarroDistributed by NVIDIA
- Skill
- Tool integration
- Science and research
- Link-only
- Medium risk
- Has scripts
Install
Get the skill from its source (we cannot redistribute it):
https://github.com/NVIDIA/skills/tree/fce3cca4170be75e82c64920654d56ee2811b005/skills/bionemo-parabricks
Documentation by Angel Pizarro
The licence of this skill does not allow us to copy its documentation. Read it at the source
Files
- BENCHMARK.md(opens on GitHub)Not mirrored: opens on GitHub13.5 KiB
- SKILL.md(opens on GitHub)Not mirrored: opens on GitHub11.1 KiB
- evals/evals.json(opens on GitHub)Not mirrored: opens on GitHub61.9 KiB
- evals/files/rna-batch.json(opens on GitHub)Not mirrored: opens on GitHub4.5 KiB
- evals/files/rna-contracts.json(opens on GitHub)Not mirrored: opens on GitHub3.7 KiB
- references/command-conventions.md(opens on GitHub)Not mirrored: opens on GitHub6.9 KiB
- references/minimap2-controls.md(opens on GitHub)Not mirrored: opens on GitHub1.4 KiB
- references/pbrun-applybqsr.md(opens on GitHub)Not mirrored: opens on GitHub2.0 KiB
- references/pbrun-bam2fq.md(opens on GitHub)Not mirrored: opens on GitHub4.0 KiB
- references/pbrun-bammetrics.md(opens on GitHub)Not mirrored: opens on GitHub4.2 KiB
- references/pbrun-bamsort.md(opens on GitHub)Not mirrored: opens on GitHub2.6 KiB
- references/pbrun-bqsr.md(opens on GitHub)Not mirrored: opens on GitHub1.9 KiB
- references/pbrun-collectmultiplemetrics.md(opens on GitHub)Not mirrored: opens on GitHub5.3 KiB
- references/pbrun-dbsnp.md(opens on GitHub)Not mirrored: opens on GitHub1.7 KiB
- references/pbrun-deepsomatic.md(opens on GitHub)Not mirrored: opens on GitHub2.3 KiB
- references/pbrun-deepvariant.md(opens on GitHub)Not mirrored: opens on GitHub3.5 KiB
- references/pbrun-deepvariant_germline.md(opens on GitHub)Not mirrored: opens on GitHub2.6 KiB
- references/pbrun-fq2bam.md(opens on GitHub)Not mirrored: opens on GitHub6.4 KiB
- references/pbrun-fq2bam_meth.md(opens on GitHub)Not mirrored: opens on GitHub3.1 KiB
- references/pbrun-genotypegvcf.md(opens on GitHub)Not mirrored: opens on GitHub1.8 KiB
- references/pbrun-germline.md(opens on GitHub)Not mirrored: opens on GitHub2.9 KiB
- references/pbrun-giraffe.md(opens on GitHub)Not mirrored: opens on GitHub7.2 KiB
- references/pbrun-haplotypecaller.md(opens on GitHub)Not mirrored: opens on GitHub4.5 KiB
- references/pbrun-indexgvcf.md(opens on GitHub)Not mirrored: opens on GitHub2.9 KiB
- references/pbrun-markdup.md(opens on GitHub)Not mirrored: opens on GitHub4.1 KiB
- references/pbrun-minimap2.md(opens on GitHub)Not mirrored: opens on GitHub3.9 KiB
- references/pbrun-mutectcaller.md(opens on GitHub)Not mirrored: opens on GitHub3.3 KiB
- references/pbrun-ont_germline.md(opens on GitHub)Not mirrored: opens on GitHub2.4 KiB
- references/pbrun-pacbio_germline.md(opens on GitHub)Not mirrored: opens on GitHub2.4 KiB
- references/pbrun-pangenome_aware_deepvariant.md(opens on GitHub)Not mirrored: opens on GitHub5.6 KiB
- references/pbrun-pangenome_germline.md(opens on GitHub)Not mirrored: opens on GitHub3.9 KiB
- references/pbrun-postpon.md(opens on GitHub)Not mirrored: opens on GitHub1.1 KiB
- references/pbrun-prepon.md(opens on GitHub)Not mirrored: opens on GitHub1.4 KiB
- references/pbrun-rna_fq2bam.md(opens on GitHub)Not mirrored: opens on GitHub13.6 KiB
- references/pbrun-somatic.md(opens on GitHub)Not mirrored: opens on GitHub5.1 KiB
- references/pbrun-starfusion.md(opens on GitHub)Not mirrored: opens on GitHub9.5 KiB
- references/performance.md(opens on GitHub)Not mirrored: opens on GitHub1.8 KiB
- references/rna-translation.md(opens on GitHub)Not mirrored: opens on GitHub2.9 KiB
- references/runtime-environment.md(opens on GitHub)Not mirrored: opens on GitHub12.5 KiB
- references/shared-options.md(opens on GitHub)Not mirrored: opens on GitHub13.2 KiB
- references/tool-index.md(opens on GitHub)Not mirrored: opens on GitHub9.6 KiB
- scripts/check_parabricks_runtime.py(opens on GitHub)ScriptNot mirrored: opens on GitHub1.7 KiB
- scripts/check_parabricks_runtime.sh(opens on GitHub)ScriptNot mirrored: opens on GitHub25.8 KiB
- scripts/translate_star_to_parabricks.py(opens on GitHub)ScriptNot mirrored: opens on GitHub14.1 KiB
- skill-card.md(opens on GitHub)Not mirrored: opens on GitHub5.6 KiB
- skill.oms.sig(opens on GitHub)Not mirrored: opens on GitHub14.3 KiB
Requirements and compatibility
Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta
“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.
Needs: Needs an MCP server, Needs an API key, Needs Python
Security
What our scanner noticed· Medium risk
- Large base64-encoded blobs
- Scripts that your agent may run
This skill includes scripts that your agent may run. Read them before you use it.
A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.
Attribution and licence
- Created by
- Angel Pizarro
- Publisher
- NVIDIA (Official)
- Distributed by
- NVIDIA
- Source
- NVIDIA/skills · skills/bionemo-parabricks · commit fce3cca
- Licence
- Unrecognised licence declaration: CC-BY-4.0 AND Apache-2.0 (link-only: we do not redistribute its files)
- Synced
AutoGineer is not affiliated with or endorsed by Angel Pizarro or NVIDIA.
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Get it from the source
This skill’s licence does not allow redistribution, so we link to it instead: NVIDIA/skills