Paperclip
K-Dense· Community
Interface for searching and reading biomedical literature, regulatory documents, and clinical trial data via the GXL Paperclip CLI and SDK.
Skills from K-Dense’s repositories that passed our trust, licence and security gates. Each keeps its author’s attribution.
| Repository | Tier | Verdict | Authorship | Checked | Skills |
|---|---|---|---|---|---|
| K-Dense-AI/claude-scientific-writer | Project | Approved · created 2025-10-27, pushed 2026-11-07, 2559 stars | Written in-house | 2026-11-07 | 26 |
| K-Dense-AI/scientific-agent-skills | Project | Approved · created 2025-10-19, pushed 2026-11-02, 56393 stars | Written in-house | 2026-11-07 | 177 |
Files are mirrored only where the licence allows redistribution; otherwise we link to the source.
K-Dense· Community
Interface for searching and reading biomedical literature, regulatory documents, and clinical trial data via the GXL Paperclip CLI and SDK.
K-Dense· Community
Analyze flow cytometry data and reproduce FlowJo workspaces using the FlowKit Python library.
K-Dense· Community
A comprehensive workflow for designing, auditing, and validating PCR and RT-qPCR primer pairs using local tools.
K-Dense· Community
Builds and validates clinical machine-learning pipelines for EHR, signals, and medical imaging using PyHealth 2.0.2.
K-Dense· Community
A guide for storing and querying chunked N-D scientific arrays using Zarr-Python 3.
K-Dense· Community
Simulate lithium-ion battery experiments using PyBaMM with automated numerical validation and parameter provenance.
K-Dense· Community
A systematic framework for conducting, documenting, and reporting academic literature reviews.
K-Dense· Community
Build, manage, and execute reproducible genomics workloads on the DNAnexus platform using the dx CLI, SDK, and workflow tools.
K-Dense· Community
Build, diagnose, and compare Bayesian probabilistic models using PyMC, PyTensor, and ArviZ.
K-Dense· Community
Convert diverse document formats into structured Markdown for RAG, search, and text analysis using Microsoft MarkItDown.
K-Dense· Community
A toolkit for generating and validating research-only documentation for clinical decision-support systems.
K-Dense· Community
A rigorous, manifest-driven workflow for creating and auditing scientific posters in macro-free PowerPoint.
K-Dense· Community
A local, evidence-traceable framework for developmental review of scholarly works and research assessment processes.
K-Dense· Community
Generate visually engaging, research-backed scientific presentation slides for conferences, seminars, and thesis defenses.
K-Dense· Community
A structured, local-only workflow for formatting and validating clinician-authored treatment plan documentation.
K-Dense· Community
Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.
K-Dense· Community
A local, deterministic tool for drafting clinical and research reports using verified source-fact manifests.
K-Dense· Community
Generate publication-quality scientific diagrams with automated quality review and iterative refinement.
K-Dense· Community
Systematic citation management for academic research, including database searching, metadata extraction, validation, and BibTeX formatting.
K-Dense· Community
A rigorous, local-first workflow for drafting, auditing, and managing scientific manuscripts with strict evidence traceability.
K-Dense· Community
Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx or .dotx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a 'report', 'memo', 'letter', 'template', or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.
K-Dense· Community
A local-only, evidence-bounded workflow for preparing rigorous and constructive scientific peer review drafts.
K-Dense· Community
A structured workflow for transforming observations into transparent, testable scientific research plans.
K-Dense· Community
A systematic framework for conducting academic literature reviews with automated search, citation verification, and document generation.