K-DenseCommunity

@K-Dense-AI on GitHub

Skills from K-Dense’s repositories that passed our trust, licence and security gates. Each keeps its author’s attribution.

Sources and trust

RepositoryTierVerdictAuthorshipCheckedSkills
K-Dense-AI/claude-scientific-writerProjectApproved · created 2025-10-27, pushed 2026-11-07, 2559 starsWritten in-house2026-11-0726
K-Dense-AI/scientific-agent-skillsProjectApproved · created 2025-10-19, pushed 2026-11-02, 56393 starsWritten in-house2026-11-07177

Files are mirrored only where the licence allows redistribution; otherwise we link to the source.

203 published skills

  • Paperclip

    K-Dense· Community

    Interface for searching and reading biomedical literature, regulatory documents, and clinical trial data via the GXL Paperclip CLI and SDK.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITMedium riskGitHub stars of the source repository56.4k
  • Flowkit

    K-Dense· Community

    Analyze flow cytometry data and reproduce FlowJo workspaces using the FlowKit Python library.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Primer Design

    K-Dense· Community

    A comprehensive workflow for designing, auditing, and validating PCR and RT-qPCR primer pairs using local tools.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Pyhealth

    K-Dense· Community

    Builds and validates clinical machine-learning pipelines for EHR, signals, and medical imaging using PyHealth 2.0.2.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Zarr Python

    K-Dense· Community

    A guide for storing and querying chunked N-D scientific arrays using Zarr-Python 3.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k
  • Pybamm

    K-Dense· Community

    Simulate lithium-ion battery experiments using PyBaMM with automated numerical validation and parameter provenance.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Literature Review

    K-Dense· Community

    A systematic framework for conducting, documenting, and reporting academic literature reviews.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Dnanexus Integration

    K-Dense· Community

    Build, manage, and execute reproducible genomics workloads on the DNAnexus platform using the dx CLI, SDK, and workflow tools.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Pymc

    K-Dense· Community

    Build, diagnose, and compare Bayesian probabilistic models using PyMC, PyTensor, and ArviZ.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Markitdown

    K-Dense· Community

    Convert diverse document formats into structured Markdown for RAG, search, and text analysis using Microsoft MarkItDown.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Clinical Decision Support

    K-Dense· Community

    A toolkit for generating and validating research-only documentation for clinical decision-support systems.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • PPTX Posters

    K-Dense· Community

    A rigorous, manifest-driven workflow for creating and auditing scientific posters in macro-free PowerPoint.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Scholar Evaluation

    K-Dense· Community

    A local, evidence-traceable framework for developmental review of scholarly works and research assessment processes.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Scientific Slides

    K-Dense· Community

    Generate visually engaging, research-backed scientific presentation slides for conferences, seminars, and thesis defenses.

    Documents and contentClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Treatment Plans

    K-Dense· Community

    A structured, local-only workflow for formatting and validating clinician-authored treatment plan documentation.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • PDF

    K-Dense· Community

    Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.

    Documents and contentClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyLow riskHas scriptsGitHub stars of the source repository2.6k
  • Clinical Reports

    K-Dense· Community

    A local, deterministic tool for drafting clinical and research reports using verified source-fact manifests.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Scientific Schematics

    K-Dense· Community

    Generate publication-quality scientific diagrams with automated quality review and iterative refinement.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Citation Management

    K-Dense· Community

    Systematic citation management for academic research, including database searching, metadata extraction, validation, and BibTeX formatting.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Scientific Writing

    K-Dense· Community

    A rigorous, local-first workflow for drafting, auditing, and managing scientific manuscripts with strict evidence traceability.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • DOCX

    K-Dense· Community

    Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx or .dotx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a 'report', 'memo', 'letter', 'template', or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.

    Documents and contentClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyLow riskHas scriptsGitHub stars of the source repository2.6k
  • Peer Review

    K-Dense· Community

    A local-only, evidence-bounded workflow for preparing rigorous and constructive scientific peer review drafts.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Hypothesis Generation

    K-Dense· Community

    A structured workflow for transforming observations into transparent, testable scientific research plans.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository2.6k
  • Literature Review

    K-Dense· Community

    A systematic framework for conducting academic literature reviews with automated search, citation verification, and document generation.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITMedium riskHas scriptsGitHub stars of the source repository2.6k