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Deepspot M

K-DenseCommunityCreated by Ratschlab, ETH ZurichDistributed by K-Dense

  • Skill
  • Tool integration
  • Science and research
  • Link-only
  • Low risk

From the author

Generates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.
— the description by Ratschlab, ETH Zurich

Install

Documentation by Ratschlab, ETH Zurich

The licence of this skill does not allow us to copy its documentation. Read it at the source

Files

Requirements and compatibility

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Needs: Declares allowed tools, Needs Python

The author says: Requires deepspotm 1.0.0, Python >=3.10 and PyTorch; network and approved Hugging Face access for initial gated weight download. CPU supported; CUDA optional. Optional histolab 0.7.0 tiling requires a separate Python 3.10/3.11 environment and OpenSlide. AnnData is needed for H5AD export.

Security

What our scanner noticed· Low risk

  • Instructions that use the network

A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.

Attribution and licence

Created by
Ratschlab, ETH Zurich
Publisher
K-Dense (Community)
Distributed by
K-Dense
Source
K-Dense-AI/scientific-agent-skills · skills/deepspot-m · commit a25cf9e
Licence
Unrecognised licence declaration: PolyForm-Noncommercial-1.0.0 (link-only: we do not redistribute its files)
Synced

AutoGineer is not affiliated with or endorsed by Ratschlab, ETH Zurich or K-Dense.

Get it from the source

This skill’s licence does not allow redistribution, so we link to it instead: K-Dense-AI/scientific-agent-skills