Bids — Agent Skill by K-Dense

From the author

Organizes, queries, validates, and converts Brain Imaging Data Structure (BIDS) datasets. Supports organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars, or creating BIDS derivatives.

— the description by Yaroslav Halchenko

Install

Get the skill from its source (we cannot redistribute it):
https://github.com/K-Dense-AI/scientific-agent-skills/tree/a25cf9ec00e2745d03f8704acf6f6919694ccd9a/skills/bids

Documentation by Yaroslav Halchenko

The licence of this skill does not allow us to copy its documentation. Read it at the source

Files

SKILL.md(opens on GitHub)Not mirrored: opens on GitHub14.5 KiB
references/beps.yml(opens on GitHub)Not mirrored: opens on GitHub24.8 KiB
references/bids_schema.json(opens on GitHub)Not mirrored: opens on GitHub806.4 KiB
references/bids_specification.md(opens on GitHub)Not mirrored: opens on GitHub9.0 KiB
references/conversion_tools.md(opens on GitHub)Not mirrored: opens on GitHub20.0 KiB
references/core_workflows.md(opens on GitHub)Not mirrored: opens on GitHub20.0 KiB
references/metadata_fields.md(opens on GitHub)Not mirrored: opens on GitHub11.4 KiB
scripts/update_schema.py(opens on GitHub)ScriptNot mirrored: opens on GitHub4.0 KiB

Requirements and compatibility

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Needs: Needs Python

The author says: Requires Python 3.10+ for PyBIDS and the validator wrapper; dcm2niix for DICOM conversion. Network access for installation and schema updates; no API credentials required.

Security

What our scanner noticed· Low risk

Instructions that use the network
Scripts that your agent may run

This skill includes scripts that your agent may run. Read them before you use it.

A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.

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